This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTDB] metagenome; soil
HIT:
143 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180020848
FTDB01002797
[FTDB] metagenome; soil
2
76
+
Thr
GGT
[ENA]
¢þ
>WENV180020770
FTDB01001312
[FTDB] metagenome; soil
4
78
+
Val
CAC
[ENA]
¢þ
>WENV180020802
FTDB01002101
[FTDB] metagenome; soil
5
80
+
Ala
GGC
[ENA]
¢þ
>WENV180020794
FTDB01001954
[FTDB] metagenome; soil
7
96
+
Ser
CGA
[ENA]
¢þ
>WENV180020724
FTDB01000514
[FTDB] metagenome; soil
9
84
+
Phe
GAA
[ENA]
¢þ
>WENV180020740
FTDB01000777
[FTDB] metagenome; soil
9
93
+
Leu
TAG
[ENA]
¢þ
>WENV180020784
FTDB01001627
[FTDB] metagenome; soil
10
85
+
Thr
CGT
[ENA]
¢þ
>WENV180020761
FTDB01001178
[FTDB] metagenome; soil
11
97
+
Leu
CAG
[ENA]
¢þ
>WENV180020796
FTDB01001983
[FTDB] metagenome; soil
12
95
+
Leu
CAA
[ENA]
¢þ
>WENV180020718
FTDB01000096
[FTDB] metagenome; soil
13
99
+
Leu
TAA
[ENA]
¢þ
>WENV180020821
FTDB01002376
[FTDB] metagenome; soil
15
91
+
Asp
GTC
[ENA]
¢þ
>WENV180020852
FTDB01002847
[FTDB] metagenome; soil
17
91
+
Gly
GCC
[ENA]
¢þ
>WENV180020799
FTDB01002019
[FTDB] metagenome; soil
17
93
+
Pro
GGG
[ENA]
¢þ
>WENV180020800
FTDB01002035
[FTDB] metagenome; soil
19
94
+
Ala
CGC
[ENA]
¢þ
>WENV180020820
FTDB01002354
[FTDB] metagenome; soil
19
95
+
Pro
GGG
[ENA]
¢þ
>WENV180020766
FTDB01001258
[FTDB] metagenome; soil
20
95
+
Lys
CTT
[ENA]
¢þ
>WENV180020797
FTDB01001993
[FTDB] metagenome; soil
20
96
+
fMet
CAT
[ENA]
¢þ
>WENV180020804
FTDB01002164
[FTDB] metagenome; soil
20
96
+
fMet
CAT
[ENA]
¢þ
>WENV180020778
FTDB01001494
[FTDB] metagenome; soil
25
99
+
Gly
GCC
[ENA]
¢þ
>WENV180020730
FTDB01000617
[FTDB] metagenome; soil
44
117
+
Cys
GCA
[ENA]
¢þ
>WENV180020788
FTDB01001815
[FTDB] metagenome; soil
55
128
+
Gly
TCC
[ENA]
¢þ
>WENV180020798
FTDB01001995
[FTDB] metagenome; soil
81
-1
-
Leu
TAG
[ENA]
¢þ
>WENV180020813
FTDB01002282
[FTDB] metagenome; soil
95
6
-
Ser
CGA
[ENA]
¢þ
>WENV180020751
FTDB01000892
[FTDB] metagenome; soil
95
20
-
Val
TAC
[ENA]
¢þ
>WENV180020767
FTDB01001261
[FTDB] metagenome; soil
99
26
-
Gly
CCC
[ENA]
¢þ
>WENV180020758
FTDB01000949
[FTDB] metagenome; soil
101
15
-
Leu
CAG
[ENA]
¢þ
>WENV180020779
FTDB01001506
[FTDB] metagenome; soil
135
211
+
fMet
CAT
[ENA]
¢þ
>WENV180020818
FTDB01002303
[FTDB] metagenome; soil
227
154
-
Gly
TCC
[ENA]
¢þ
>WENV180020720
FTDB01000195
[FTDB] metagenome; soil
242
318
+
Pro
TGG
[ENA]
¢þ
>WENV180020715
FTDB01000002
[FTDB] metagenome; soil
257
182
-
Ala
TGC
[ENA]
¢þ
>WENV180020776
FTDB01001473
[FTDB] metagenome; soil
411
336
-
Val
TAC
[ENA]
¢þ
>WENV180020817
FTDB01002303
[FTDB] metagenome; soil
496
413
-
Tyr
GTA
[ENA]
¢þ
>WENV180020714
FTDB01000002
[FTDB] metagenome; soil
623
548
-
Val
CAC
[ENA]
¢þ
>WENV180020728
FTDB01000592
[FTDB] metagenome; soil
634
560
-
Gly
GCC
[ENA]
¢þ
>WENV180020747
FTDB01000861
[FTDB] metagenome; soil
646
721
+
Lys
CTT
[ENA]
¢þ
>WENV180020840
FTDB01002682
[FTDB] metagenome; soil
647
723
+
Pro
GGG
[ENA]
¢þ
>WENV180020782
FTDB01001582
[FTDB] metagenome; soil
971
1046
+
Thr
TGT
[ENA]
¢þ
>WENV180020845
FTDB01002765
[FTDB] metagenome; soil
1068
1142
+
Gln
TTG
[ENA]
¢þ
>WENV180020713
FTDB01000002
[FTDB] metagenome; soil
1075
991
-
Leu
CAA
[ENA]
¢þ
>WENV180020792
FTDB01001921
[FTDB] metagenome; soil
1251
1176
-
Phe
GAA
[ENA]
¢þ
>WENV180020781
FTDB01001565
[FTDB] metagenome; soil
1498
1582
+
Leu
CAA
[ENA]
¢þ
>WENV180020722
FTDB01000256
[FTDB] metagenome; soil
1502
1426
-
Lys
TTT
[ENA]
¢þ
>WENV180020712
FTDB01000002
[FTDB] metagenome; soil
1639
1555
-
Leu
GAG
[ENA]
¢þ
>WENV180020755
FTDB01000938
[FTDB] metagenome; soil
1688
1764
+
Asp
GTC
[ENA]
¢þ
>WENV180020748
FTDB01000871
[FTDB] metagenome; soil
1742
1669
-
Cys
GCA
[ENA]
¢þ
>WENV180020760
FTDB01000987
[FTDB] metagenome; soil
1749
1831
+
Leu
TAG
[ENA]
¢þ
>WENV180020711
FTDB01000002
[FTDB] metagenome; soil
1766
1688
-
Arg
ACG
[ENA]
¢þ
>WENV180020835
FTDB01002642
[FTDB] metagenome; soil
1846
1770
-
His
GTG
[ENA]
¢þ
>WENV180020775
FTDB01001452
[FTDB] metagenome; soil
1857
1781
-
Arg
CCT
[ENA]
¢þ
>WENV180020756
FTDB01000938
[FTDB] metagenome; soil
1862
1938
+
Asp
GTC
[ENA]
¢þ
>WENV180020769
FTDB01001303
[FTDB] metagenome; soil
1914
1825
-
Ser
TGA
[ENA]
¢þ
>WENV180020716
FTDB01000039
[FTDB] metagenome; soil
2029
2104
+
Ala
CGC
[ENA]
¢þ
>WENV180020771
FTDB01001343
[FTDB] metagenome; soil
2134
2218
+
Leu
CAA
[ENA]
¢þ
>WENV180020710
FTDB01000002
[FTDB] metagenome; soil
2153
2077
-
Lys
TTT
[ENA]
¢þ
>WENV180020811
FTDB01002259
[FTDB] metagenome; soil
2202
2276
+
Thr
CGT
[ENA]
¢þ
>WENV180020723
FTDB01000329
[FTDB] metagenome; soil
2225
2136
-
Ser
GGA
[ENA]
¢þ
>WENV180020843
FTDB01002720
[FTDB] metagenome; soil
2384
2309
-
Phe
GAA
[ENA]
¢þ
>WENV180020762
FTDB01001204
[FTDB] metagenome; soil
2385
2471
+
Ser
GGA
[ENA]
¢þ
>WENV180020739
FTDB01000743
[FTDB] metagenome; soil
2520
2445
-
Thr
TGT
[ENA]
¢þ
>WENV180020812
FTDB01002275
[FTDB] metagenome; soil
2561
2637
+
Asp
GTC
[ENA]
¢þ
>WENV180020786
FTDB01001667
[FTDB] metagenome; soil
2644
2560
-
Leu
TAG
[ENA]
¢þ
>WENV180020833
FTDB01002612
[FTDB] metagenome; soil
2681
2770
+
Ser
GGA
[ENA]
¢þ
>WENV180020763
FTDB01001204
[FTDB] metagenome; soil
2730
2806
+
fMet
CAT
[ENA]
¢þ
>WENV180020846
FTDB01002788
[FTDB] metagenome; soil
2747
2836
+
Ser
TGA
[ENA]
¢þ
>WENV180020801
FTDB01002090
[FTDB] metagenome; soil
2813
2724
-
Ser
GGA
[ENA]
¢þ
>WENV180020764
FTDB01001204
[FTDB] metagenome; soil
2850
2925
+
Ala
GGC
[ENA]
¢þ
>WENV180020746
FTDB01000853
[FTDB] metagenome; soil
2928
2852
-
Met
CAT
[ENA]
¢þ
>WENV180020721
FTDB01000224
[FTDB] metagenome; soil
2949
2874
-
Lys
CTT
[ENA]
¢þ
>WENV180020824
FTDB01002505
[FTDB] metagenome; soil
3026
2937
-
Ser
TGA
[ENA]
¢þ
>WENV180020717
FTDB01000074
[FTDB] metagenome; soil
3045
2956
-
Ser
CGA
[ENA]
¢þ
>WENV180020729
FTDB01000605
[FTDB] metagenome; soil
3162
3086
-
Met
CAT
[ENA]
¢þ
>WENV180020744
FTDB01000818
[FTDB] metagenome; soil
3243
3167
-
His
GTG
[ENA]
¢þ
>WENV180020773
FTDB01001373
[FTDB] metagenome; soil
3342
3418
+
Asp
GTC
[ENA]
¢þ
>WENV180020823
FTDB01002481
[FTDB] metagenome; soil
3360
3285
-
Ala
GGC
[ENA]
¢þ
>WENV180020765
FTDB01001204
[FTDB] metagenome; soil
3528
3605
+
Met
CAT
[ENA]
¢þ
>WENV180020844
FTDB01002723
[FTDB] metagenome; soil
3812
3903
+
Ser
GCT
[ENA]
¢þ
>WENV180020757
FTDB01000947
[FTDB] metagenome; soil
3916
3842
-
Gln
TTG
[ENA]
¢þ
>WENV180020834
FTDB01002621
[FTDB] metagenome; soil
3932
3857
-
Lys
CTT
[ENA]
¢þ
>WENV180020745
FTDB01000845
[FTDB] metagenome; soil
4250
4175
-
Ala
CGC
[ENA]
¢þ
>WENV180020754
FTDB01000936
[FTDB] metagenome; soil
4285
4360
+
Thr
CGT
[ENA]
¢þ
>WENV180020837
FTDB01002665
[FTDB] metagenome; soil
4598
4674
+
Asp
GTC
[ENA]
¢þ
>WENV180020785
FTDB01001654
[FTDB] metagenome; soil
4724
4799
+
Ala
CGC
[ENA]
¢þ
>WENV180020774
FTDB01001392
[FTDB] metagenome; soil
4757
4681
-
Arg
CCG
[ENA]
¢þ
>WENV180020725
FTDB01000544
[FTDB] metagenome; soil
4815
4890
+
His
GTG
[ENA]
¢þ
>WENV180020783
FTDB01001589
[FTDB] metagenome; soil
5009
5084
+
Lys
CTT
[ENA]
¢þ
>WENV180020726
FTDB01000569
[FTDB] metagenome; soil
5352
5276
-
Arg
CCG
[ENA]
¢þ
>WENV180020795
FTDB01001974
[FTDB] metagenome; soil
5354
5427
+
Gln
TTG
[ENA]
¢þ
>WENV180020810
FTDB01002231
[FTDB] metagenome; soil
5406
5482
+
Arg
CCG
[ENA]
¢þ
>WENV180020836
FTDB01002646
[FTDB] metagenome; soil
5476
5552
+
Met
CAT
[ENA]
¢þ
>WENV180020743
FTDB01000815
[FTDB] metagenome; soil
5585
5510
-
Ile2
CAT
[ENA]
¢þ
>WENV180020733
FTDB01000660
[FTDB] metagenome; soil
5893
5819
-
Thr
GGT
[ENA]
¢þ
>WENV180020742
FTDB01000779
[FTDB] metagenome; soil
6371
6446
+
Phe
GAA
[ENA]
¢þ
>WENV180020772
FTDB01001364
[FTDB] metagenome; soil
6541
6465
-
Arg
ACG
[ENA]
¢þ
>WENV180020790
FTDB01001873
[FTDB] metagenome; soil
6938
6852
-
Leu
CAG
[ENA]
¢þ
>WENV180020750
FTDB01000887
[FTDB] metagenome; soil
7739
7813
+
Val
GAC
[ENA]
¢þ
>WENV180020815
FTDB01002303
[FTDB] metagenome; soil
8080
8155
+
Thr
TGT
[ENA]
¢þ
>WENV180020819
FTDB01002318
[FTDB] metagenome; soil
8264
8339
+
Glu
CTC
[ENA]
¢þ
>WENV180020841
FTDB01002685
[FTDB] metagenome; soil
8552
8477
-
Asn
GTT
[ENA]
¢þ
>WENV180020793
FTDB01001935
[FTDB] metagenome; soil
8574
8648
+
Glu
TTC
[ENA]
¢þ
>WENV180020851
FTDB01002836
[FTDB] metagenome; soil
9149
9224
+
Lys
CTT
[ENA]
¢þ
>WENV180020791
FTDB01001891
[FTDB] metagenome; soil
9259
9348
+
Ser
TGA
[ENA]
¢þ
>WENV180020753
FTDB01000924
[FTDB] metagenome; soil
9754
9829
+
Trp
CCA
[ENA]
¢þ
>WENV180020803
FTDB01002103
[FTDB] metagenome; soil
10429
10355
-
Thr
GGT
[ENA]
¢þ
>WENV180020768
FTDB01001298
[FTDB] metagenome; soil
11073
11149
+
Arg
ACG
[ENA]
¢þ
>WENV180020830
FTDB01002576
[FTDB] metagenome; soil
11241
11317
+
Lys
TTT
[ENA]
¢þ
>WENV180020749
FTDB01000883
[FTDB] metagenome; soil
11287
11377
+
Ser
GCT
[ENA]
¢þ
>WENV180020808
FTDB01002203
[FTDB] metagenome; soil
11432
11507
+
Trp
CCA
[ENA]
¢þ
>WENV180020780
FTDB01001543
[FTDB] metagenome; soil
11616
11692
+
Arg
TCT
[ENA]
¢þ
>WENV180020842
FTDB01002690
[FTDB] metagenome; soil
12454
12380
-
Val
CAC
[ENA]
¢þ
>WENV180020727
FTDB01000576
[FTDB] metagenome; soil
12688
12602
-
Leu
CAG
[ENA]
¢þ
>WENV180020752
FTDB01000918
[FTDB] metagenome; soil
12917
12842
-
His
GTG
[ENA]
¢þ
>WENV180020814
FTDB01002284
[FTDB] metagenome; soil
12961
12888
-
Gly
CCC
[ENA]
¢þ
>WENV180020849
FTDB01002798
[FTDB] metagenome; soil
13112
13201
+
Ser
TGA
[ENA]
¢þ
>WENV180020839
FTDB01002665
[FTDB] metagenome; soil
13280
13205
-
Val
TAC
[ENA]
¢þ
>WENV180020777
FTDB01001488
[FTDB] metagenome; soil
14257
14182
-
Phe
GAA
[ENA]
¢þ
>WENV180020809
FTDB01002222
[FTDB] metagenome; soil
14825
14736
-
Ser
CGA
[ENA]
¢þ
>WENV180020737
FTDB01000692
[FTDB] metagenome; soil
14889
14963
+
Ile2
CAT
[ENA]
¢þ
>WENV180020738
FTDB01000716
[FTDB] metagenome; soil
14900
14827
-
Gly
CCC
[ENA]
¢þ
>WENV180020822
FTDB01002393
[FTDB] metagenome; soil
15526
15451
-
Thr
CGT
[ENA]
¢þ
>WENV180020807
FTDB01002183
[FTDB] metagenome; soil
16038
15954
-
Leu
GAG
[ENA]
¢þ
>WENV180020719
FTDB01000154
[FTDB] metagenome; soil
16520
16444
-
Arg
CCG
[ENA]
¢þ
>WENV180020847
FTDB01002796
[FTDB] metagenome; soil
16847
16773
-
Val
CAC
[ENA]
¢þ
>WENV180020731
FTDB01000625
[FTDB] metagenome; soil
17480
17404
-
Pro
GGG
[ENA]
¢þ
>WENV180020806
FTDB01002169
[FTDB] metagenome; soil
18822
18898
+
Arg
ACG
[ENA]
¢þ
>WENV180020736
FTDB01000674
[FTDB] metagenome; soil
19644
19555
-
Ser
CGA
[ENA]
¢þ
>WENV180020825
FTDB01002513
[FTDB] metagenome; soil
20335
20424
+
Ser
TGA
[ENA]
¢þ
>WENV180020805
FTDB01002164
[FTDB] metagenome; soil
22876
22801
-
Asn
GTT
[ENA]
¢þ
>WENV180020832
FTDB01002590
[FTDB] metagenome; soil
24559
24485
-
Thr
GGT
[ENA]
¢þ
>WENV180020759
FTDB01000956
[FTDB] metagenome; soil
24745
24829
+
Leu
GAG
[ENA]
¢þ
>WENV180020789
FTDB01001835
[FTDB] metagenome; soil
26725
26650
-
Ala
CGC
[ENA]
¢þ
>WENV180020787
FTDB01001669
[FTDB] metagenome; soil
26780
26705
-
Glu
TTC
[ENA]
¢þ
>WENV180020831
FTDB01002590
[FTDB] metagenome; soil
31661
31736
+
Phe
GAA
[ENA]
¢þ
>WENV180020741
FTDB01000778
[FTDB] metagenome; soil
32018
31943
-
Lys
CTT
[ENA]
¢þ
>WENV180020838
FTDB01002665
[FTDB] metagenome; soil
33710
33626
-
Leu
TAG
[ENA]
¢þ
>WENV180020816
FTDB01002303
[FTDB] metagenome; soil
37884
37811
-
Gln
TTG
[ENA]
¢þ
>WENV180020829
FTDB01002513
[FTDB] metagenome; soil
39000
38924
-
Arg
TCT
[ENA]
¢þ
>WENV180020828
FTDB01002513
[FTDB] metagenome; soil
39613
39537
-
Pro
CGG
[ENA]
¢þ
>WENV180020827
FTDB01002513
[FTDB] metagenome; soil
39717
39641
-
Pro
TGG
[ENA]
¢þ
>WENV180020826
FTDB01002513
[FTDB] metagenome; soil
40820
40746
-
Glu
TTC
[ENA]
¢þ
>WENV180020850
FTDB01002798
[FTDB] metagenome; soil
43807
43731
-
Arg
TCT
[ENA]
¢þ
>WENV180020734
FTDB01000669
[FTDB] metagenome; soil
45974
46048
+
Val
GAC
[ENA]
¢þ
>WENV180020735
FTDB01000671
[FTDB] metagenome; soil
69786
69870
+
Leu
CAA
[ENA]
¢þ
>WENV180020732
FTDB01000656
[FTDB] metagenome; soil
86795
86871
+
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK