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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA gene List
[FTDD] metagenome; soil
HIT:
10 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180020861
FTDD01000200
[FTDD] metagenome; soil
1
77
+
fMet
CAT
[ENA]
¢þ
>WENV180020856
FTDD01000033
[FTDD] metagenome; soil
14
89
+
Lys
CTT
[ENA]
¢þ
>WENV180020858
FTDD01000138
[FTDD] metagenome; soil
27
102
+
Thr
TGT
[ENA]
¢þ
>WENV180020864
FTDD01000219
[FTDD] metagenome; soil
1490
1415
-
Ile2
CAT
[ENA]
¢þ
>WENV180020863
FTDD01000211
[FTDD] metagenome; soil
2473
2548
+
Thr
TGT
[ENA]
¢þ
>WENV180020857
FTDD01000114
[FTDD] metagenome; soil
4441
4525
+
Leu
TAG
[ENA]
¢þ
>WENV180020860
FTDD01000180
[FTDD] metagenome; soil
5310
5234
-
fMet
CAT
[ENA]
¢þ
>WENV180020859
FTDD01000174
[FTDD] metagenome; soil
8045
7969
-
fMet
CAT
[ENA]
¢þ
>WENV180020865
FTDD01000220
[FTDD] metagenome; soil
9881
9796
-
Leu
TAA
[ENA]
¢þ
>WENV180020862
FTDD01000200
[FTDD] metagenome; soil
12328
12404
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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