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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTDG] metagenome; soil
HIT:
105 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180020946
FTDG01003262
[FTDG] metagenome; soil
7
97
+
Ser
GGA
[ENA]
¢þ
>WENV180020920
FTDG01002421
[FTDG] metagenome; soil
7
97
+
Ser
GGA
[ENA]
¢þ
>WENV180020952
FTDG01003502
[FTDG] metagenome; soil
7
97
+
Ser
GGA
[ENA]
¢þ
>WENV180020915
FTDG01002229
[FTDG] metagenome; soil
9
84
+
Lys
CTT
[ENA]
¢þ
>WENV180020875
FTDG01000467
[FTDG] metagenome; soil
10
97
+
Ser
CGA
[ENA]
¢þ
>WENV180020872
FTDG01000001
[FTDG] metagenome; soil
12
99
+
Ser
TGA
[ENA]
¢þ
>WENV180020972
FTDG01004058
[FTDG] metagenome; soil
12
99
+
Leu
TAA
[ENA]
¢þ
>WENV180020888
FTDG01001021
[FTDG] metagenome; soil
14
89
+
Lys
CTT
[ENA]
¢þ
>WENV180020896
FTDG01001368
[FTDG] metagenome; soil
16
92
+
Asp
GTC
[ENA]
¢þ
>WENV180020976
FTDG01004235
[FTDG] metagenome; soil
22
97
+
His
GTG
[ENA]
¢þ
>WENV180020951
FTDG01003476
[FTDG] metagenome; soil
25
100
+
Phe
GAA
[ENA]
¢þ
>WENV180020947
FTDG01003317
[FTDG] metagenome; soil
29
105
+
Met
CAT
[ENA]
¢þ
>WENV180020943
FTDG01003201
[FTDG] metagenome; soil
30
104
+
Met
CAT
[ENA]
¢þ
>WENV180020966
FTDG01003902
[FTDG] metagenome; soil
89
-1
-
Ser
GGA
[ENA]
¢þ
>WENV180020931
FTDG01002835
[FTDG] metagenome; soil
130
206
+
Asp
GTC
[ENA]
¢þ
>WENV180020916
FTDG01002241
[FTDG] metagenome; soil
283
196
-
Leu
TAA
[ENA]
¢þ
>WENV180020914
FTDG01002198
[FTDG] metagenome; soil
313
387
+
Glu
TTC
[ENA]
¢þ
>WENV180020897
FTDG01001391
[FTDG] metagenome; soil
404
480
+
Arg
TCT
[ENA]
¢þ
>WENV180020923
FTDG01002580
[FTDG] metagenome; soil
420
496
+
fMet
CAT
[ENA]
¢þ
>WENV180020948
FTDG01003416
[FTDG] metagenome; soil
428
504
+
Arg
TCT
[ENA]
¢þ
>WENV180020957
FTDG01003589
[FTDG] metagenome; soil
484
559
+
Thr
TGT
[ENA]
¢þ
>WENV180020936
FTDG01003087
[FTDG] metagenome; soil
560
635
+
Ala
CGC
[ENA]
¢þ
>WENV180020969
FTDG01003973
[FTDG] metagenome; soil
664
738
+
Gln
TTG
[ENA]
¢þ
>WENV180020877
FTDG01000615
[FTDG] metagenome; soil
733
657
-
Gln
TTG
[ENA]
¢þ
>WENV180020883
FTDG01000769
[FTDG] metagenome; soil
734
810
+
Pro
TGG
[ENA]
¢þ
>WENV180020878
FTDG01000652
[FTDG] metagenome; soil
745
819
+
Val
CAC
[ENA]
¢þ
>WENV180020903
FTDG01001884
[FTDG] metagenome; soil
814
738
-
Arg
TCT
[ENA]
¢þ
>WENV180020874
FTDG01000038
[FTDG] metagenome; soil
819
744
-
Thr
CGT
[ENA]
¢þ
>WENV180020899
FTDG01001562
[FTDG] metagenome; soil
827
902
+
Glu
TTC
[ENA]
¢þ
>WENV180020965
FTDG01003900
[FTDG] metagenome; soil
863
939
+
Ile2
CAT
[ENA]
¢þ
>WENV180020924
FTDG01002630
[FTDG] metagenome; soil
891
818
-
Gly
CCC
[ENA]
¢þ
>WENV180020908
FTDG01002041
[FTDG] metagenome; soil
894
820
-
Arg
CCT
[ENA]
¢þ
>WENV180020873
FTDG01000038
[FTDG] metagenome; soil
900
825
-
Thr
GGT
[ENA]
¢þ
>WENV180020901
FTDG01001744
[FTDG] metagenome; soil
940
1014
+
Lys
TTT
[ENA]
¢þ
>WENV180020900
FTDG01001562
[FTDG] metagenome; soil
1161
1236
+
His
GTG
[ENA]
¢þ
>WENV180020963
FTDG01003712
[FTDG] metagenome; soil
1230
1306
+
Met
CAT
[ENA]
¢þ
>WENV180020925
FTDG01002635
[FTDG] metagenome; soil
1285
1363
+
Arg
ACG
[ENA]
¢þ
>WENV180020913
FTDG01002108
[FTDG] metagenome; soil
1312
1237
-
Arg
CCG
[ENA]
¢þ
>WENV180020937
FTDG01003134
[FTDG] metagenome; soil
1362
1435
+
Gly
CCC
[ENA]
¢þ
>WENV180020926
FTDG01002635
[FTDG] metagenome; soil
1383
1458
+
Pro
TGG
[ENA]
¢þ
>WENV180020912
FTDG01002108
[FTDG] metagenome; soil
1416
1332
-
Leu
CAG
[ENA]
¢þ
>WENV180020927
FTDG01002635
[FTDG] metagenome; soil
1473
1558
+
Leu
CAG
[ENA]
¢þ
>WENV180020911
FTDG01002108
[FTDG] metagenome; soil
1505
1430
-
Pro
TGG
[ENA]
¢þ
>WENV180020928
FTDG01002635
[FTDG] metagenome; soil
1567
1642
+
Gln
TTG
[ENA]
¢þ
>WENV180020910
FTDG01002108
[FTDG] metagenome; soil
1589
1512
-
Arg
ACG
[ENA]
¢þ
>WENV180020929
FTDG01002635
[FTDG] metagenome; soil
1651
1727
+
Arg
CCG
[ENA]
¢þ
>WENV180020898
FTDG01001507
[FTDG] metagenome; soil
1717
1804
+
Leu
TAA
[ENA]
¢þ
>WENV180020930
FTDG01002641
[FTDG] metagenome; soil
1718
1794
+
Val
GAC
[ENA]
¢þ
>WENV180020940
FTDG01003177
[FTDG] metagenome; soil
1817
1732
-
Leu
CAG
[ENA]
¢þ
>WENV180020939
FTDG01003177
[FTDG] metagenome; soil
1900
1825
-
Asn
GTT
[ENA]
¢þ
>WENV180020938
FTDG01003177
[FTDG] metagenome; soil
1983
1906
-
Arg
ACG
[ENA]
¢þ
>WENV180020895
FTDG01001190
[FTDG] metagenome; soil
2024
2100
+
Arg
ACG
[ENA]
¢þ
>WENV180020956
FTDG01003585
[FTDG] metagenome; soil
2035
1959
-
Arg
TCT
[ENA]
¢þ
>WENV180020944
FTDG01003209
[FTDG] metagenome; soil
2039
1965
-
Val
CAC
[ENA]
¢þ
>WENV180020932
FTDG01002915
[FTDG] metagenome; soil
2050
2134
+
Leu
TAA
[ENA]
¢þ
>WENV180020884
FTDG01000894
[FTDG] metagenome; soil
2247
2171
-
Pro
GGG
[ENA]
¢þ
>WENV180020909
FTDG01002060
[FTDG] metagenome; soil
2392
2465
+
Gly
CCC
[ENA]
¢þ
>WENV180020935
FTDG01003077
[FTDG] metagenome; soil
2406
2481
+
Ala
CGC
[ENA]
¢þ
>WENV180020922
FTDG01002526
[FTDG] metagenome; soil
2407
2318
-
Leu
TAA
[ENA]
¢þ
>WENV180020885
FTDG01000917
[FTDG] metagenome; soil
2490
2414
-
Val
GAC
[ENA]
¢þ
>WENV180020887
FTDG01001000
[FTDG] metagenome; soil
2529
2604
+
Thr
CGT
[ENA]
¢þ
>WENV180020882
FTDG01000755
[FTDG] metagenome; soil
2825
2738
-
Ser
TGA
[ENA]
¢þ
>WENV180020962
FTDG01003697
[FTDG] metagenome; soil
2847
2923
+
Arg
ACG
[ENA]
¢þ
>WENV180020879
FTDG01000655
[FTDG] metagenome; soil
2919
3005
+
Ser
CGA
[ENA]
¢þ
>WENV180020880
FTDG01000700
[FTDG] metagenome; soil
3067
2992
-
Thr
TGT
[ENA]
¢þ
>WENV180020949
FTDG01003416
[FTDG] metagenome; soil
3189
3265
+
Pro
TGG
[ENA]
¢þ
>WENV180020917
FTDG01002312
[FTDG] metagenome; soil
3427
3512
+
Cys
GCA
[ENA]
¢þ
>WENV180020918
FTDG01002312
[FTDG] metagenome; soil
3538
3612
+
His
GTG
[ENA]
¢þ
>WENV180020964
FTDG01003739
[FTDG] metagenome; soil
4086
3999
-
Ser
TGA
[ENA]
¢þ
>WENV180020907
FTDG01002025
[FTDG] metagenome; soil
4233
4157
-
Pro
TGG
[ENA]
¢þ
>WENV180020919
FTDG01002322
[FTDG] metagenome; soil
4263
4179
-
Leu
CAG
[ENA]
¢þ
>WENV180020961
FTDG01003666
[FTDG] metagenome; soil
4476
4549
+
Gly
CCC
[ENA]
¢þ
>WENV180020941
FTDG01003195
[FTDG] metagenome; soil
4490
4414
-
Pro
CGG
[ENA]
¢þ
>WENV180020881
FTDG01000746
[FTDG] metagenome; soil
4533
4460
-
Cys
GCA
[ENA]
¢þ
>WENV180020960
FTDG01003617
[FTDG] metagenome; soil
4540
4468
-
His
GTG
[ENA]
¢þ
>WENV180020967
FTDG01003948
[FTDG] metagenome; soil
4626
4702
+
fMet
CAT
[ENA]
¢þ
>WENV180020959
FTDG01003617
[FTDG] metagenome; soil
4649
4564
-
Cys
GCA
[ENA]
¢þ
>WENV180020950
FTDG01003455
[FTDG] metagenome; soil
4743
4667
-
fMet
CAT
[ENA]
¢þ
>WENV180020958
FTDG01003617
[FTDG] metagenome; soil
4820
4745
-
Glu
TTC
[ENA]
¢þ
>WENV180020934
FTDG01003046
[FTDG] metagenome; soil
5049
4965
-
Leu
CAA
[ENA]
¢þ
>WENV180020955
FTDG01003506
[FTDG] metagenome; soil
5172
5096
-
Pro
TGG
[ENA]
¢þ
>WENV180020942
FTDG01003198
[FTDG] metagenome; soil
5172
5096
-
Ile2
CAT
[ENA]
¢þ
>WENV180020971
FTDG01004031
[FTDG] metagenome; soil
5659
5584
-
His
GTG
[ENA]
¢þ
>WENV180020945
FTDG01003250
[FTDG] metagenome; soil
6353
6277
-
Pro
GGG
[ENA]
¢þ
>WENV180020933
FTDG01003022
[FTDG] metagenome; soil
7238
7163
-
Thr
TGT
[ENA]
¢þ
>WENV180020906
FTDG01001932
[FTDG] metagenome; soil
7277
7202
-
Asn
GTT
[ENA]
¢þ
>WENV180020905
FTDG01001932
[FTDG] metagenome; soil
7434
7359
-
Asn
GTT
[ENA]
¢þ
>WENV180020975
FTDG01004203
[FTDG] metagenome; soil
9281
9206
-
Ala
CGC
[ENA]
¢þ
>WENV180020876
FTDG01000610
[FTDG] metagenome; soil
9724
9640
-
Leu
CAA
[ENA]
¢þ
>WENV180020968
FTDG01003970
[FTDG] metagenome; soil
9922
9846
-
Arg
CCG
[ENA]
¢þ
>WENV180020886
FTDG01000957
[FTDG] metagenome; soil
10134
10058
-
Arg
TCT
[ENA]
¢þ
>WENV180020973
FTDG01004163
[FTDG] metagenome; soil
10633
10708
+
Lys
TTT
[ENA]
¢þ
>WENV180020974
FTDG01004163
[FTDG] metagenome; soil
10841
10916
+
Lys
CTT
[ENA]
¢þ
>WENV180020954
FTDG01003504
[FTDG] metagenome; soil
12694
12619
-
His
GTG
[ENA]
¢þ
>WENV180020902
FTDG01001764
[FTDG] metagenome; soil
13175
13099
-
fMet
CAT
[ENA]
¢þ
>WENV180020953
FTDG01003504
[FTDG] metagenome; soil
14903
14828
-
Val
TAC
[ENA]
¢þ
>WENV180020921
FTDG01002423
[FTDG] metagenome; soil
16288
16213
-
Ala
CGC
[ENA]
¢þ
>WENV180020970
FTDG01004018
[FTDG] metagenome; soil
43776
43700
-
Pro
GGG
[ENA]
¢þ
>WENV180020904
FTDG01001906
[FTDG] metagenome; soil
52067
51991
-
Pro
GGG
[ENA]
¢þ
>WENV180020889
FTDG01001039
[FTDG] metagenome; soil
80492
80566
+
Gln
TTG
[ENA]
¢þ
>WENV180020890
FTDG01001039
[FTDG] metagenome; soil
80573
80648
+
Met
CAT
[ENA]
¢þ
>WENV180020891
FTDG01001039
[FTDG] metagenome; soil
80654
80728
+
Asn
GTT
[ENA]
¢þ
>WENV180020892
FTDG01001039
[FTDG] metagenome; soil
81079
81154
+
Cys
GCA
[ENA]
¢þ
>WENV180020893
FTDG01001039
[FTDG] metagenome; soil
81200
81275
+
Thr
TGT
[ENA]
¢þ
>WENV180020894
FTDG01001039
[FTDG] metagenome; soil
81282
81358
+
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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