This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTDJ] metagenome; soil
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021003
FTDJ01000731
[FTDJ] metagenome; soil
3
77
+
Gly
GCC
[ENA]
¢þ
>WENV180021012
FTDJ01001137
[FTDJ] metagenome; soil
19
95
+
Pro
GGG
[ENA]
¢þ
>WENV180021014
FTDJ01001228
[FTDJ] metagenome; soil
22
97
+
Lys
CTT
[ENA]
¢þ
>WENV180020990
FTDJ01000364
[FTDJ] metagenome; soil
59
132
+
Cys
GCA
[ENA]
¢þ
>WENV180021020
FTDJ01001397
[FTDJ] metagenome; soil
71
1
-
Gly
CCC
[ENA]
¢þ
>WENV180021022
FTDJ01001440
[FTDJ] metagenome; soil
77
3
-
Glu
TTC
[ENA]
¢þ
>WENV180021021
FTDJ01001417
[FTDJ] metagenome; soil
95
4
-
Ser
GCT
[ENA]
¢þ
>WENV180020991
FTDJ01000402
[FTDJ] metagenome; soil
98
14
-
Leu
GAG
[ENA]
¢þ
>WENV180020986
FTDJ01000020
[FTDJ] metagenome; soil
98
23
-
Val
TAC
[ENA]
¢þ
>WENV180021015
FTDJ01001230
[FTDJ] metagenome; soil
145
70
-
Thr
CGT
[ENA]
¢þ
>WENV180021002
FTDJ01000676
[FTDJ] metagenome; soil
206
133
-
Gly
TCC
[ENA]
¢þ
>WENV180021017
FTDJ01001282
[FTDJ] metagenome; soil
353
429
+
Asp
GTC
[ENA]
¢þ
>WENV180021001
FTDJ01000676
[FTDJ] metagenome; soil
435
352
-
Tyr
GTA
[ENA]
¢þ
>WENV180021007
FTDJ01000818
[FTDJ] metagenome; soil
492
568
+
Met
CAT
[ENA]
¢þ
>WENV180021013
FTDJ01001157
[FTDJ] metagenome; soil
793
707
-
Leu
TAA
[ENA]
¢þ
>WENV180020988
FTDJ01000165
[FTDJ] metagenome; soil
1071
1154
+
Leu
CAA
[ENA]
¢þ
>WENV180021005
FTDJ01000755
[FTDJ] metagenome; soil
1178
1254
+
Met
CAT
[ENA]
¢þ
>WENV180021010
FTDJ01000955
[FTDJ] metagenome; soil
1191
1266
+
Ile2
CAT
[ENA]
¢þ
>WENV180020997
FTDJ01000574
[FTDJ] metagenome; soil
1208
1283
+
Ala
CGC
[ENA]
¢þ
>WENV180020999
FTDJ01000657
[FTDJ] metagenome; soil
1544
1469
-
Val
TAC
[ENA]
¢þ
>WENV180020993
FTDJ01000453
[FTDJ] metagenome; soil
1995
2068
+
Gly
CCC
[ENA]
¢þ
>WENV180020998
FTDJ01000643
[FTDJ] metagenome; soil
2238
2313
+
Ala
GGC
[ENA]
¢þ
>WENV180021000
FTDJ01000675
[FTDJ] metagenome; soil
2278
2202
-
Arg
CCG
[ENA]
¢þ
>WENV180021009
FTDJ01000946
[FTDJ] metagenome; soil
2433
2509
+
Arg
ACG
[ENA]
¢þ
>WENV180021006
FTDJ01000768
[FTDJ] metagenome; soil
2488
2561
+
Gln
TTG
[ENA]
¢þ
>WENV180021016
FTDJ01001246
[FTDJ] metagenome; soil
2939
3013
+
Thr
GGT
[ENA]
¢þ
>WENV180020995
FTDJ01000492
[FTDJ] metagenome; soil
3125
3041
-
Leu
CAA
[ENA]
¢þ
>WENV180021008
FTDJ01000939
[FTDJ] metagenome; soil
3581
3656
+
Ala
GGC
[ENA]
¢þ
>WENV180020996
FTDJ01000540
[FTDJ] metagenome; soil
3884
3810
-
Gly
GCC
[ENA]
¢þ
>WENV180020989
FTDJ01000198
[FTDJ] metagenome; soil
4105
4019
-
Leu
CAG
[ENA]
¢þ
>WENV180021004
FTDJ01000750
[FTDJ] metagenome; soil
4262
4186
-
fMet
CAT
[ENA]
¢þ
>WENV180021019
FTDJ01001351
[FTDJ] metagenome; soil
5126
5050
-
Lys
TTT
[ENA]
¢þ
>WENV180020994
FTDJ01000490
[FTDJ] metagenome; soil
5577
5503
-
Val
CAC
[ENA]
¢þ
>WENV180020987
FTDJ01000131
[FTDJ] metagenome; soil
5787
5698
-
Ser
GGA
[ENA]
¢þ
>WENV180021018
FTDJ01001282
[FTDJ] metagenome; soil
10838
10763
-
Val
TAC
[ENA]
¢þ
>WENV180021011
FTDJ01001003
[FTDJ] metagenome; soil
12609
12520
-
Ser
CGA
[ENA]
¢þ
>WENV180020992
FTDJ01000450
[FTDJ] metagenome; soil
13293
13218
-
Ala
CGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK