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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTDL] metagenome; soil
HIT:
21 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021040
FTDL01000117
[FTDL] metagenome; soil
107
34
-
Lys
TTT
[ENA]
¢þ
>WENV180021030
FTDL01000045
[FTDL] metagenome; soil
464
538
+
Ala
GGC
[ENA]
¢þ
>WENV180021024
FTDL01000016
[FTDL] metagenome; soil
1067
1140
+
Gln
TTG
[ENA]
¢þ
>WENV180021037
FTDL01000083
[FTDL] metagenome; soil
2387
2302
-
Ser
TGA
[ENA]
¢þ
>WENV180021029
FTDL01000041
[FTDL] metagenome; soil
3432
3346
-
Leu
TAA
[ENA]
¢þ
>WENV180021028
FTDL01000041
[FTDL] metagenome; soil
3560
3487
-
Gly
GCC
[ENA]
¢þ
>WENV180021035
FTDL01000062
[FTDL] metagenome; soil
3565
3491
-
His
GTG
[ENA]
¢þ
>WENV180021044
FTDL01000122
[FTDL] metagenome; soil
3978
3896
-
Leu
TAG
[ENA]
¢þ
>WENV180021031
FTDL01000045
[FTDL] metagenome; soil
6671
6745
+
Asn
GTT
[ENA]
¢þ
>WENV180021025
FTDL01000020
[FTDL] metagenome; soil
6818
6746
-
Phe
GAA
[ENA]
¢þ
>WENV180021034
FTDL01000046
[FTDL] metagenome; soil
9472
9390
-
Leu
CAA
[ENA]
¢þ
>WENV180021026
FTDL01000024
[FTDL] metagenome; soil
10648
10573
-
fMet
CAT
[ENA]
¢þ
>WENV180021039
FTDL01000111
[FTDL] metagenome; soil
15552
15479
-
Thr
TGT
[ENA]
¢þ
>WENV180021038
FTDL01000111
[FTDL] metagenome; soil
15970
15897
-
Thr
TGT
[ENA]
¢þ
>WENV180021041
FTDL01000120
[FTDL] metagenome; soil
16281
16368
+
Tyr
GTA
[ENA]
¢þ
>WENV180021042
FTDL01000120
[FTDL] metagenome; soil
16449
16522
+
Gly
TCC
[ENA]
¢þ
>WENV180021043
FTDL01000120
[FTDL] metagenome; soil
16536
16609
+
Thr
GGT
[ENA]
¢þ
>WENV180021036
FTDL01000067
[FTDL] metagenome; soil
24931
25020
+
Ser
GGA
[ENA]
¢þ
>WENV180021033
FTDL01000046
[FTDL] metagenome; soil
32865
32793
-
Glu
TTC
[ENA]
¢þ
>WENV180021032
FTDL01000046
[FTDL] metagenome; soil
33046
32974
-
Glu
TTC
[ENA]
¢þ
>WENV180021027
FTDL01000041
[FTDL] metagenome; soil
36540
36613
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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