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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTDO] metagenome; soil
HIT:
16 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021061
FTDO01000644
[FTDO] metagenome; soil
62
138
+
Arg
TCT
[ENA]
¢þ
>WENV180021051
FTDO01000249
[FTDO] metagenome; soil
131
58
-
Leu
CAA
[ENA]
¢þ
>WENV180021062
FTDO01000644
[FTDO] metagenome; soil
164
237
+
His
GTG
[ENA]
¢þ
>WENV180021060
FTDO01000620
[FTDO] metagenome; soil
439
364
-
Arg
CCT
[ENA]
¢þ
>WENV180021063
FTDO01000644
[FTDO] metagenome; soil
453
528
+
Lys
CTT
[ENA]
¢þ
>WENV180021055
FTDO01000500
[FTDO] metagenome; soil
565
490
-
Gly
CCC
[ENA]
¢þ
>WENV180021058
FTDO01000584
[FTDO] metagenome; soil
744
831
+
Ser
TGA
[ENA]
¢þ
>WENV180021054
FTDO01000421
[FTDO] metagenome; soil
1880
1793
-
Ser
TGA
[ENA]
¢þ
>WENV180021064
FTDO01000645
[FTDO] metagenome; soil
2235
2162
-
Gln
TTG
[ENA]
¢þ
>WENV180021049
FTDO01000044
[FTDO] metagenome; soil
2705
2620
-
Leu
CAA
[ENA]
¢þ
>WENV180021052
FTDO01000276
[FTDO] metagenome; soil
3417
3503
+
Leu
CAG
[ENA]
¢þ
>WENV180021053
FTDO01000398
[FTDO] metagenome; soil
4609
4532
-
His
GTG
[ENA]
¢þ
>WENV180021057
FTDO01000577
[FTDO] metagenome; soil
4843
4927
+
Leu
GAG
[ENA]
¢þ
>WENV180021056
FTDO01000520
[FTDO] metagenome; soil
6131
6205
+
Val
CAC
[ENA]
¢þ
>WENV180021059
FTDO01000617
[FTDO] metagenome; soil
7787
7862
+
Ala
CGC
[ENA]
¢þ
>WENV180021050
FTDO01000135
[FTDO] metagenome; soil
15416
15489
+
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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