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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTDT] metagenome; soil
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021104
FTDT01000257
[FTDT] metagenome; soil
73
-1
-
Arg
ACG
[ENA]
¢þ
>WENV180021088
FTDT01000130
[FTDT] metagenome; soil
90
5
-
Leu
CAG
[ENA]
¢þ
>WENV180021070
FTDT01000017
[FTDT] metagenome; soil
291
217
-
Glu
CTC
[ENA]
¢þ
>WENV180021075
FTDT01000052
[FTDT] metagenome; soil
544
470
-
Arg
CCG
[ENA]
¢þ
>WENV180021076
FTDT01000059
[FTDT] metagenome; soil
576
493
-
Leu
TAG
[ENA]
¢þ
>WENV180021078
FTDT01000074
[FTDT] metagenome; soil
1720
1631
-
Ser
CGA
[ENA]
¢þ
>WENV180021091
FTDT01000139
[FTDT] metagenome; soil
1730
1814
+
Leu
GAG
[ENA]
¢þ
>WENV180021098
FTDT01000181
[FTDT] metagenome; soil
1924
1999
+
Arg
CCT
[ENA]
¢þ
>WENV180021100
FTDT01000223
[FTDT] metagenome; soil
2172
2097
-
Gly
GCC
[ENA]
¢þ
>WENV180021071
FTDT01000022
[FTDT] metagenome; soil
3332
3258
-
Lys
TTT
[ENA]
¢þ
>WENV180021073
FTDT01000025
[FTDT] metagenome; soil
3472
3398
-
Met
CAT
[ENA]
¢þ
>WENV180021077
FTDT01000074
[FTDT] metagenome; soil
4006
3917
-
Ser
CGA
[ENA]
¢þ
>WENV180021101
FTDT01000224
[FTDT] metagenome; soil
5515
5439
-
Pro
TGG
[ENA]
¢þ
>WENV180021096
FTDT01000160
[FTDT] metagenome; soil
6018
5935
-
Leu
TAA
[ENA]
¢þ
>WENV180021102
FTDT01000228
[FTDT] metagenome; soil
6469
6393
-
fMet
CAT
[ENA]
¢þ
>WENV180021087
FTDT01000122
[FTDT] metagenome; soil
6715
6791
+
Pro
GGG
[ENA]
¢þ
>WENV180021085
FTDT01000088
[FTDT] metagenome; soil
7340
7267
-
Gln
CTG
[ENA]
¢þ
>WENV180021084
FTDT01000088
[FTDT] metagenome; soil
7442
7368
-
Thr
TGT
[ENA]
¢þ
>WENV180021083
FTDT01000088
[FTDT] metagenome; soil
7573
7499
-
Lys
CTT
[ENA]
¢þ
>WENV180021103
FTDT01000231
[FTDT] metagenome; soil
8577
8666
+
Ser
TGA
[ENA]
¢þ
>WENV180021072
FTDT01000025
[FTDT] metagenome; soil
10607
10680
+
Val
TAC
[ENA]
¢þ
>WENV180021105
FTDT01000263
[FTDT] metagenome; soil
12406
12332
-
Cys
GCA
[ENA]
¢þ
>WENV180021089
FTDT01000134
[FTDT] metagenome; soil
14596
14672
+
Asp
GTC
[ENA]
¢þ
>WENV180021079
FTDT01000083
[FTDT] metagenome; soil
15241
15152
-
Ser
GGA
[ENA]
¢þ
>WENV180021092
FTDT01000146
[FTDT] metagenome; soil
17056
16983
-
Gly
TCC
[ENA]
¢þ
>WENV180021090
FTDT01000137
[FTDT] metagenome; soil
17557
17474
-
Tyr
GTA
[ENA]
¢þ
>WENV180021080
FTDT01000086
[FTDT] metagenome; soil
21281
21357
+
Arg
TCT
[ENA]
¢þ
>WENV180021099
FTDT01000221
[FTDT] metagenome; soil
22017
22093
+
Pro
CGG
[ENA]
¢þ
>WENV180021086
FTDT01000116
[FTDT] metagenome; soil
22625
22700
+
Ala
GGC
[ENA]
¢þ
>WENV180021097
FTDT01000170
[FTDT] metagenome; soil
26557
26481
-
Glu
TTC
[ENA]
¢þ
>WENV180021082
FTDT01000088
[FTDT] metagenome; soil
27029
27104
+
Thr
CGT
[ENA]
¢þ
>WENV180021074
FTDT01000050
[FTDT] metagenome; soil
29529
29448
-
Leu
CAA
[ENA]
¢þ
>WENV180021081
FTDT01000086
[FTDT] metagenome; soil
34254
34345
+
Ser
GCT
[ENA]
¢þ
>WENV180021094
FTDT01000159
[FTDT] metagenome; soil
37596
37521
-
Phe
GAA
[ENA]
¢þ
>WENV180021093
FTDT01000154
[FTDT] metagenome; soil
47818
47892
+
Asn
GTT
[ENA]
¢þ
>WENV180021095
FTDT01000160
[FTDT] metagenome; soil
50307
50234
-
Val
CAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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