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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTDW] metagenome; soil
HIT:
16 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021140
FTDW01000619
[FTDW] metagenome; soil
9
95
+
Leu
CAA
[ENA]
¢þ
>WENV180021146
FTDW01001069
[FTDW] metagenome; soil
17
100
+
Leu
CAG
[ENA]
¢þ
>WENV180021139
FTDW01000567
[FTDW] metagenome; soil
27
99
+
Thr
TGT
[ENA]
¢þ
>WENV180021145
FTDW01000822
[FTDW] metagenome; soil
63
139
+
Arg
CCG
[ENA]
¢þ
>WENV180021138
FTDW01000485
[FTDW] metagenome; soil
79
5
-
Val
GAC
[ENA]
¢þ
>WENV180021137
FTDW01000400
[FTDW] metagenome; soil
121
48
-
Gln
CTG
[ENA]
¢þ
>WENV180021141
FTDW01000644
[FTDW] metagenome; soil
155
79
-
Asp
GTC
[ENA]
¢þ
>WENV180021132
FTDW01000281
[FTDW] metagenome; soil
1130
1206
+
Pro
TGG
[ENA]
¢þ
>WENV180021133
FTDW01000281
[FTDW] metagenome; soil
1243
1319
+
Arg
TCT
[ENA]
¢þ
>WENV180021136
FTDW01000344
[FTDW] metagenome; soil
1255
1329
+
His
GTG
[ENA]
¢þ
>WENV180021134
FTDW01000281
[FTDW] metagenome; soil
1335
1410
+
His
GTG
[ENA]
¢þ
>WENV180021135
FTDW01000281
[FTDW] metagenome; soil
1423
1498
+
Lys
CTT
[ENA]
¢þ
>WENV180021143
FTDW01000778
[FTDW] metagenome; soil
1818
1893
+
Gly
GCC
[ENA]
¢þ
>WENV180021142
FTDW01000707
[FTDW] metagenome; soil
1909
1834
-
Glu
CTC
[ENA]
¢þ
>WENV180021144
FTDW01000778
[FTDW] metagenome; soil
1955
2028
+
Cys
GCA
[ENA]
¢þ
>WENV180021147
FTDW01001088
[FTDW] metagenome; soil
6426
6352
-
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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