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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTDY] metagenome; soil
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021196
FTDY01001940
[FTDY] metagenome; soil
4
94
+
Ser
GCT
[ENA]
¢þ
>WENV180021157
FTDY01000452
[FTDY] metagenome; soil
8
99
+
Ser
GGA
[ENA]
¢þ
>WENV180021186
FTDY01001644
[FTDY] metagenome; soil
83
2
-
Leu
TAG
[ENA]
¢þ
>WENV180021153
FTDY01000165
[FTDY] metagenome; soil
90
-1
-
Ser
GGA
[ENA]
¢þ
>WENV180021154
FTDY01000195
[FTDY] metagenome; soil
98
27
-
Cys
GCA
[ENA]
¢þ
>WENV180021174
FTDY01001223
[FTDY] metagenome; soil
261
188
-
Lys
TTT
[ENA]
¢þ
>WENV180021159
FTDY01000754
[FTDY] metagenome; soil
288
214
-
Val
CAC
[ENA]
¢þ
>WENV180021158
FTDY01000684
[FTDY] metagenome; soil
300
215
-
Leu
TAA
[ENA]
¢þ
>WENV180021184
FTDY01001595
[FTDY] metagenome; soil
370
443
+
Gln
CTG
[ENA]
¢þ
>WENV180021156
FTDY01000451
[FTDY] metagenome; soil
405
330
-
Phe
GAA
[ENA]
¢þ
>WENV180021194
FTDY01001887
[FTDY] metagenome; soil
480
556
+
Pro
TGG
[ENA]
¢þ
>WENV180021187
FTDY01001683
[FTDY] metagenome; soil
491
415
-
Pro
GGG
[ENA]
¢þ
>WENV180021164
FTDY01001030
[FTDY] metagenome; soil
510
437
-
Gln
CTG
[ENA]
¢þ
>WENV180021155
FTDY01000343
[FTDY] metagenome; soil
719
645
-
Asn
GTT
[ENA]
¢þ
>WENV180021172
FTDY01001117
[FTDY] metagenome; soil
901
817
-
Leu
CAG
[ENA]
¢þ
>WENV180021185
FTDY01001616
[FTDY] metagenome; soil
1023
1108
+
Leu
TAG
[ENA]
¢þ
>WENV180021151
FTDY01000058
[FTDY] metagenome; soil
1505
1430
-
Trp
CCA
[ENA]
¢þ
>WENV180021161
FTDY01000906
[FTDY] metagenome; soil
1680
1765
+
Tyr
GTA
[ENA]
¢þ
>WENV180021188
FTDY01001730
[FTDY] metagenome; soil
1696
1621
-
Val
TAC
[ENA]
¢þ
>WENV180021162
FTDY01000906
[FTDY] metagenome; soil
1851
1924
+
Gly
TCC
[ENA]
¢þ
>WENV180021163
FTDY01000906
[FTDY] metagenome; soil
1936
2010
+
Thr
GGT
[ENA]
¢þ
>WENV180021179
FTDY01001487
[FTDY] metagenome; soil
2003
1931
-
Thr
CGT
[ENA]
¢þ
>WENV180021152
FTDY01000133
[FTDY] metagenome; soil
2104
2030
-
Val
GAC
[ENA]
¢þ
>WENV180021165
FTDY01001038
[FTDY] metagenome; soil
2262
2338
+
Arg
TCT
[ENA]
¢þ
>WENV180021176
FTDY01001277
[FTDY] metagenome; soil
2318
2242
-
fMet
CAT
[ENA]
¢þ
>WENV180021160
FTDY01000764
[FTDY] metagenome; soil
2360
2279
-
Leu
TAG
[ENA]
¢þ
>WENV180021189
FTDY01001739
[FTDY] metagenome; soil
2425
2509
+
Leu
GAG
[ENA]
¢þ
>WENV180021181
FTDY01001504
[FTDY] metagenome; soil
2615
2704
+
Ser
TGA
[ENA]
¢þ
>WENV180021193
FTDY01001810
[FTDY] metagenome; soil
2623
2547
-
Asp
GTC
[ENA]
¢þ
>WENV180021197
FTDY01001941
[FTDY] metagenome; soil
3213
3288
+
Glu
TTC
[ENA]
¢þ
>WENV180021190
FTDY01001760
[FTDY] metagenome; soil
4422
4496
+
Gln
TTG
[ENA]
¢þ
>WENV180021182
FTDY01001551
[FTDY] metagenome; soil
4707
4633
-
Val
CAC
[ENA]
¢þ
>WENV180021183
FTDY01001567
[FTDY] metagenome; soil
5017
4943
-
Gln
TTG
[ENA]
¢þ
>WENV180021171
FTDY01001112
[FTDY] metagenome; soil
5536
5628
+
Ser
CGA
[ENA]
¢þ
>WENV180021178
FTDY01001359
[FTDY] metagenome; soil
7124
7210
+
Leu
CAA
[ENA]
¢þ
>WENV180021170
FTDY01001060
[FTDY] metagenome; soil
7588
7515
-
Ile2
CAT
[ENA]
¢þ
>WENV180021192
FTDY01001785
[FTDY] metagenome; soil
8814
8888
+
Asn
GTT
[ENA]
¢þ
>WENV180021166
FTDY01001060
[FTDY] metagenome; soil
8902
8979
+
Arg
TCG
[ENA]
¢þ
>WENV180021175
FTDY01001239
[FTDY] metagenome; soil
9550
9622
+
Lys
TTT
[ENA]
¢þ
>WENV180021180
FTDY01001495
[FTDY] metagenome; soil
9612
9688
+
Pro
CGG
[ENA]
¢þ
>WENV180021167
FTDY01001060
[FTDY] metagenome; soil
9832
9906
+
Pro
TGG
[ENA]
¢þ
>WENV180021168
FTDY01001060
[FTDY] metagenome; soil
10150
10225
+
Phe
GAA
[ENA]
¢þ
>WENV180021169
FTDY01001060
[FTDY] metagenome; soil
10312
10386
+
Met
CAT
[ENA]
¢þ
>WENV180021195
FTDY01001903
[FTDY] metagenome; soil
11371
11287
-
Leu
GAG
[ENA]
¢þ
>WENV180021191
FTDY01001760
[FTDY] metagenome; soil
11940
12016
+
Met
CAT
[ENA]
¢þ
>WENV180021177
FTDY01001330
[FTDY] metagenome; soil
13293
13369
+
Asp
GTC
[ENA]
¢þ
>WENV180021173
FTDY01001134
[FTDY] metagenome; soil
22247
22322
+
Glu
CTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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