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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTEB] metagenome; soil
HIT:
14 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021213
FTEB01000055
[FTEB] metagenome; soil
14
89
+
Trp
CCA
[ENA]
¢þ
>WENV180021214
FTEB01000082
[FTEB] metagenome; soil
76
1
-
Pro
TGG
[ENA]
¢þ
>WENV180021215
FTEB01000176
[FTEB] metagenome; soil
145
221
+
Ile2
CAT
[ENA]
¢þ
>WENV180021224
FTEB01000338
[FTEB] metagenome; soil
370
446
+
Arg
CCG
[ENA]
¢þ
>WENV180021217
FTEB01000184
[FTEB] metagenome; soil
481
405
-
Pro
GGG
[ENA]
¢þ
>WENV180021225
FTEB01000347
[FTEB] metagenome; soil
561
637
+
Val
TAC
[ENA]
¢þ
>WENV180021219
FTEB01000200
[FTEB] metagenome; soil
1011
1087
+
Arg
TCT
[ENA]
¢þ
>WENV180021212
FTEB01000039
[FTEB] metagenome; soil
1493
1407
-
Leu
CAG
[ENA]
¢þ
>WENV180021220
FTEB01000208
[FTEB] metagenome; soil
2058
1983
-
Phe
GAA
[ENA]
¢þ
>WENV180021218
FTEB01000186
[FTEB] metagenome; soil
3228
3312
+
Leu
GAG
[ENA]
¢þ
>WENV180021216
FTEB01000181
[FTEB] metagenome; soil
3689
3613
-
fMet
CAT
[ENA]
¢þ
>WENV180021223
FTEB01000303
[FTEB] metagenome; soil
4207
4132
-
Thr
CGT
[ENA]
¢þ
>WENV180021222
FTEB01000275
[FTEB] metagenome; soil
4389
4314
-
Asn
GTT
[ENA]
¢þ
>WENV180021221
FTEB01000275
[FTEB] metagenome; soil
10316
10243
-
Cys
GCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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