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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FTEC] metagenome; soil
HIT:
17 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021241
FTEC01002247
[FTEC] metagenome; soil
12
99
+
Ser
TGA
[ENA]
¢þ
>WENV180021238
FTEC01001812
[FTEC] metagenome; soil
21
97
+
Pro
CGG
[ENA]
¢þ
>WENV180021231
FTEC01001182
[FTEC] metagenome; soil
23
99
+
fMet
CAT
[ENA]
¢þ
>WENV180021228
FTEC01000359
[FTEC] metagenome; soil
33
122
+
Ser
TGA
[ENA]
¢þ
>WENV180021226
FTEC01000044
[FTEC] metagenome; soil
39
124
+
Leu
TAA
[ENA]
¢þ
>WENV180021242
FTEC01002266
[FTEC] metagenome; soil
163
237
+
Lys
CTT
[ENA]
¢þ
>WENV180021230
FTEC01001176
[FTEC] metagenome; soil
167
91
-
Arg
CCG
[ENA]
¢þ
>WENV180021232
FTEC01001364
[FTEC] metagenome; soil
272
361
+
Ser
CGA
[ENA]
¢þ
>WENV180021237
FTEC01001759
[FTEC] metagenome; soil
458
533
+
Val
TAC
[ENA]
¢þ
>WENV180021234
FTEC01001434
[FTEC] metagenome; soil
608
533
-
Ala
CGC
[ENA]
¢þ
>WENV180021227
FTEC01000050
[FTEC] metagenome; soil
961
1034
+
Gly
TCC
[ENA]
¢þ
>WENV180021236
FTEC01001716
[FTEC] metagenome; soil
1244
1168
-
Arg
ACG
[ENA]
¢þ
>WENV180021233
FTEC01001434
[FTEC] metagenome; soil
1256
1332
+
Arg
CCT
[ENA]
¢þ
>WENV180021229
FTEC01000569
[FTEC] metagenome; soil
1351
1265
-
Leu
TAG
[ENA]
¢þ
>WENV180021239
FTEC01002187
[FTEC] metagenome; soil
2884
2808
-
Arg
ACG
[ENA]
¢þ
>WENV180021235
FTEC01001684
[FTEC] metagenome; soil
2920
2844
-
Arg
TCG
[ENA]
¢þ
>WENV180021240
FTEC01002235
[FTEC] metagenome; soil
3839
3764
-
Glu
CTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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