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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FTED] metagenome; soil
HIT:
11 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021245
FTED01000174
[FTED] metagenome; soil
24
99
+
Lys
CTT
[ENA]
¢þ
>WENV180021248
FTED01000404
[FTED] metagenome; soil
275
349
+
Val
GAC
[ENA]
¢þ
>WENV180021247
FTED01000217
[FTED] metagenome; soil
509
419
-
Ser
GGA
[ENA]
¢þ
>WENV180021243
FTED01000003
[FTED] metagenome; soil
519
595
+
Arg
TCT
[ENA]
¢þ
>WENV180021252
FTED01000983
[FTED] metagenome; soil
600
684
+
Leu
GAG
[ENA]
¢þ
>WENV180021244
FTED01000169
[FTED] metagenome; soil
866
938
+
Thr
CGT
[ENA]
¢þ
>WENV180021246
FTED01000209
[FTED] metagenome; soil
973
1049
+
Pro
TGG
[ENA]
¢þ
>WENV180021251
FTED01000664
[FTED] metagenome; soil
1947
1873
-
Gln
TTG
[ENA]
¢þ
>WENV180021250
FTED01000610
[FTED] metagenome; soil
4047
3974
-
Gly
CCC
[ENA]
¢þ
>WENV180021253
FTED01000986
[FTED] metagenome; soil
6503
6589
+
Leu
CAA
[ENA]
¢þ
>WENV180021249
FTED01000542
[FTED] metagenome; soil
8971
9062
+
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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