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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTEE] metagenome; soil
HIT:
11 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021262
FTEE01001126
[FTEE] metagenome; soil
23
99
+
Arg
TCT
[ENA]
¢þ
>WENV180021256
FTEE01000435
[FTEE] metagenome; soil
274
367
+
Ser
GCT
[ENA]
¢þ
>WENV180021255
FTEE01000228
[FTEE] metagenome; soil
735
659
-
fMet
CAT
[ENA]
¢þ
>WENV180021259
FTEE01000568
[FTEE] metagenome; soil
821
895
+
Arg
CCT
[ENA]
¢þ
>WENV180021258
FTEE01000543
[FTEE] metagenome; soil
927
1013
+
Leu
TAG
[ENA]
¢þ
>WENV180021260
FTEE01000570
[FTEE] metagenome; soil
1184
1098
-
Leu
CAG
[ENA]
¢þ
>WENV180021254
FTEE01000106
[FTEE] metagenome; soil
1186
1100
-
Leu
CAA
[ENA]
¢þ
>WENV180021264
FTEE01001180
[FTEE] metagenome; soil
1222
1148
-
Gln
TTG
[ENA]
¢þ
>WENV180021263
FTEE01001165
[FTEE] metagenome; soil
1288
1217
-
Lys
TTT
[ENA]
¢þ
>WENV180021257
FTEE01000534
[FTEE] metagenome; soil
1567
1490
-
Pro
GGG
[ENA]
¢þ
>WENV180021261
FTEE01001107
[FTEE] metagenome; soil
1614
1538
-
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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