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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FTEF] metagenome; soil
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021290
FTEF01001772
[FTEF] metagenome; soil
41
117
+
Val
TAC
[ENA]
¢þ
>WENV180021268
FTEF01000620
[FTEF] metagenome; soil
102
26
-
Asp
GTC
[ENA]
¢þ
>WENV180021272
FTEF01000786
[FTEF] metagenome; soil
123
48
-
Lys
CTT
[ENA]
¢þ
>WENV180021274
FTEF01000915
[FTEF] metagenome; soil
161
85
-
Met
CAT
[ENA]
¢þ
>WENV180021271
FTEF01000786
[FTEF] metagenome; soil
211
136
-
His
GTG
[ENA]
¢þ
>WENV180021267
FTEF01000620
[FTEF] metagenome; soil
216
142
-
Val
TAC
[ENA]
¢þ
>WENV180021289
FTEF01001703
[FTEF] metagenome; soil
238
154
-
Leu
CAG
[ENA]
¢þ
>WENV180021270
FTEF01000786
[FTEF] metagenome; soil
357
281
-
Arg
TCT
[ENA]
¢þ
>WENV180021266
FTEF01000543
[FTEF] metagenome; soil
432
507
+
Ala
GGC
[ENA]
¢þ
>WENV180021269
FTEF01000786
[FTEF] metagenome; soil
472
396
-
Pro
TGG
[ENA]
¢þ
>WENV180021275
FTEF01000965
[FTEF] metagenome; soil
536
625
+
Ser
CGA
[ENA]
¢þ
>WENV180021299
FTEF01002166
[FTEF] metagenome; soil
648
574
-
His
GTG
[ENA]
¢þ
>WENV180021280
FTEF01001289
[FTEF] metagenome; soil
789
714
-
Phe
GAA
[ENA]
¢þ
>WENV180021300
FTEF01002341
[FTEF] metagenome; soil
868
781
-
Leu
CAA
[ENA]
¢þ
>WENV180021297
FTEF01002027
[FTEF] metagenome; soil
930
855
-
Ala
CGC
[ENA]
¢þ
>WENV180021273
FTEF01000862
[FTEF] metagenome; soil
933
849
-
Leu
GAG
[ENA]
¢þ
>WENV180021296
FTEF01002022
[FTEF] metagenome; soil
951
876
-
Thr
CGT
[ENA]
¢þ
>WENV180021265
FTEF01000054
[FTEF] metagenome; soil
971
1060
+
Ser
TGA
[ENA]
¢þ
>WENV180021293
FTEF01001954
[FTEF] metagenome; soil
999
1074
+
Ala
GGC
[ENA]
¢þ
>WENV180021294
FTEF01001954
[FTEF] metagenome; soil
1084
1159
+
Glu
TTC
[ENA]
¢þ
>WENV180021291
FTEF01001795
[FTEF] metagenome; soil
1153
1229
+
Met
CAT
[ENA]
¢þ
>WENV180021282
FTEF01001368
[FTEF] metagenome; soil
1210
1134
-
Asp
GTC
[ENA]
¢þ
>WENV180021301
FTEF01002355
[FTEF] metagenome; soil
1355
1271
-
Leu
CAG
[ENA]
¢þ
>WENV180021277
FTEF01001084
[FTEF] metagenome; soil
1771
1696
-
Phe
GAA
[ENA]
¢þ
>WENV180021276
FTEF01001045
[FTEF] metagenome; soil
1871
1797
-
Met
CAT
[ENA]
¢þ
>WENV180021292
FTEF01001881
[FTEF] metagenome; soil
2059
2133
+
Arg
CCT
[ENA]
¢þ
>WENV180021295
FTEF01002005
[FTEF] metagenome; soil
2207
2131
-
Pro
CGG
[ENA]
¢þ
>WENV180021298
FTEF01002060
[FTEF] metagenome; soil
2389
2464
+
Val
GAC
[ENA]
¢þ
>WENV180021279
FTEF01001282
[FTEF] metagenome; soil
2430
2503
+
Arg
TCG
[ENA]
¢þ
>WENV180021281
FTEF01001290
[FTEF] metagenome; soil
2437
2527
+
Ser
GCT
[ENA]
¢þ
>WENV180021283
FTEF01001597
[FTEF] metagenome; soil
2925
3000
+
Ala
GGC
[ENA]
¢þ
>WENV180021284
FTEF01001597
[FTEF] metagenome; soil
3011
3086
+
Glu
TTC
[ENA]
¢þ
>WENV180021278
FTEF01001160
[FTEF] metagenome; soil
3046
2971
-
Thr
CGT
[ENA]
¢þ
>WENV180021287
FTEF01001631
[FTEF] metagenome; soil
4223
4152
-
Lys
TTT
[ENA]
¢þ
>WENV180021286
FTEF01001619
[FTEF] metagenome; soil
4273
4198
-
Glu
TTC
[ENA]
¢þ
>WENV180021285
FTEF01001619
[FTEF] metagenome; soil
4371
4296
-
Ala
GGC
[ENA]
¢þ
>WENV180021288
FTEF01001699
[FTEF] metagenome; soil
11573
11645
+
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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