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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTEL] metagenome; soil
HIT:
131 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021370
FTEL01002085
[FTEL] metagenome; soil
1
72
+
Gly
TCC
[ENA]
¢þ
>WENV180021402
FTEL01003800
[FTEL] metagenome; soil
2
83
+
Ser
CGA
[ENA]
¢þ
>WENV180021390
FTEL01003157
[FTEL] metagenome; soil
3
84
+
Ser
CGA
[ENA]
¢þ
>WENV180021456
FTEL01008944
[FTEL] metagenome; soil
5
99
+
Ile
AAT
[ENA]
¢þ
>WENV180021438
FTEL01007471
[FTEL] metagenome; soil
7
88
+
Ser
CGA
[ENA]
¢þ
>WENV180021464
FTEL01009247
[FTEL] metagenome; soil
8
81
+
Val
AAC
[ENA]
¢þ
>WENV180021401
FTEL01003667
[FTEL] metagenome; soil
8
81
+
Val
AAC
[ENA]
¢þ
>WENV180021420
FTEL01005482
[FTEL] metagenome; soil
46
136
+
Glu
CTC
[ENA]
¢þ
>WENV180021419
FTEL01005347
[FTEL] metagenome; soil
81
-1
-
Ser
CGA
[ENA]
¢þ
>WENV180021441
FTEL01007620
[FTEL] metagenome; soil
81
8
-
Val
AAC
[ENA]
¢þ
>WENV180021359
FTEL01000873
[FTEL] metagenome; soil
82
1
-
Ser
CGA
[ENA]
¢þ
>WENV180021459
FTEL01009003
[FTEL] metagenome; soil
91
10
-
Ser
CGA
[ENA]
¢þ
>WENV180021395
FTEL01003267
[FTEL] metagenome; soil
91
11
-
Ser
CGA
[ENA]
¢þ
>WENV180021425
FTEL01006043
[FTEL] metagenome; soil
94
24
-
Gly
GCC
[ENA]
¢þ
>WENV180021413
FTEL01004775
[FTEL] metagenome; soil
110
37
-
Val
AAC
[ENA]
¢þ
>WENV180021353
FTEL01000398
[FTEL] metagenome; soil
234
161
-
Thr
AGT
[ENA]
¢þ
>WENV180021458
FTEL01009003
[FTEL] metagenome; soil
300
227
-
Val
AAC
[ENA]
¢þ
>WENV180021446
FTEL01007821
[FTEL] metagenome; soil
330
402
+
Trp
CCA
[ENA]
¢þ
>WENV180021450
FTEL01008359
[FTEL] metagenome; soil
370
442
+
Trp
CCA
[ENA]
¢þ
>WENV180021451
FTEL01008580
[FTEL] metagenome; soil
389
460
+
Arg
CCG
[ENA]
¢þ
>WENV180021410
FTEL01004602
[FTEL] metagenome; soil
537
607
+
Gly
GCC
[ENA]
¢þ
>WENV180021444
FTEL01007711
[FTEL] metagenome; soil
613
686
+
Asn
GTT
[ENA]
¢þ
>WENV180021468
FTEL01009409
[FTEL] metagenome; soil
633
563
-
Gly
GCC
[ENA]
¢þ
>WENV180021365
FTEL01001516
[FTEL] metagenome; soil
639
568
-
Thr
AGT
[ENA]
¢þ
>WENV180021406
FTEL01004043
[FTEL] metagenome; soil
639
569
-
Gly
GCC
[ENA]
¢þ
>WENV180021445
FTEL01007732
[FTEL] metagenome; soil
668
597
-
Glu
TTC
[ENA]
¢þ
>WENV180021417
FTEL01005129
[FTEL] metagenome; soil
707
636
-
Thr
AGT
[ENA]
¢þ
>WENV180021463
FTEL01009180
[FTEL] metagenome; soil
805
879
+
Met
CAT
[ENA]
¢þ
>WENV180021361
FTEL01001304
[FTEL] metagenome; soil
828
757
-
Glu
TTC
[ENA]
¢þ
>WENV180021418
FTEL01005163
[FTEL] metagenome; soil
905
980
+
Val
AAC
[ENA]
¢þ
>WENV180021368
FTEL01001858
[FTEL] metagenome; soil
938
867
-
Thr
AGT
[ENA]
¢þ
>WENV180021448
FTEL01007917
[FTEL] metagenome; soil
951
881
-
Gly
GCC
[ENA]
¢þ
>WENV180021470
FTEL01009478
[FTEL] metagenome; soil
1125
1195
+
Gly
GCC
[ENA]
¢þ
>WENV180021352
FTEL01000339
[FTEL] metagenome; soil
1208
1124
-
Ile
TAT
[ENA]
¢þ
>WENV180021414
FTEL01004796
[FTEL] metagenome; soil
1238
1326
+
Leu
TAG
[ENA]
¢þ
>WENV180021358
FTEL01000766
[FTEL] metagenome; soil
1239
1169
-
Gly
GCC
[ENA]
¢þ
>WENV180021412
FTEL01004750
[FTEL] metagenome; soil
1278
1348
+
Gly
GCC
[ENA]
¢þ
>WENV180021409
FTEL01004287
[FTEL] metagenome; soil
1282
1352
+
Gly
GCC
[ENA]
¢þ
>WENV180021366
FTEL01001523
[FTEL] metagenome; soil
1298
1207
-
Glu
CTC
[ENA]
¢þ
>WENV180021462
FTEL01009141
[FTEL] metagenome; soil
1298
1382
+
Asp
GTC
[ENA]
¢þ
>WENV180021355
FTEL01000647
[FTEL] metagenome; soil
1307
1235
-
Gln
CTG
[ENA]
¢þ
>WENV180021404
FTEL01003912
[FTEL] metagenome; soil
1420
1350
-
Gly
GCC
[ENA]
¢þ
>WENV180021439
FTEL01007598
[FTEL] metagenome; soil
1502
1575
+
Arg
TCG
[ENA]
¢þ
>WENV180021467
FTEL01009387
[FTEL] metagenome; soil
1527
1597
+
Gly
GCC
[ENA]
¢þ
>WENV180021482
FTEL01011096
[FTEL] metagenome; soil
1529
1459
-
Gly
GCC
[ENA]
¢þ
>WENV180021455
FTEL01008878
[FTEL] metagenome; soil
1562
1491
-
Glu
CTC
[ENA]
¢þ
>WENV180021396
FTEL01003286
[FTEL] metagenome; soil
1612
1695
+
Ser
AGA
[ENA]
¢þ
>WENV180021435
FTEL01007209
[FTEL] metagenome; soil
1644
1718
+
Cys
GCA
[ENA]
¢þ
>WENV180021364
FTEL01001394
[FTEL] metagenome; soil
1654
1563
-
Arg
ACG
[ENA]
¢þ
>WENV180021403
FTEL01003886
[FTEL] metagenome; soil
1744
1673
-
Arg
ACG
[ENA]
¢þ
>WENV180021453
FTEL01008726
[FTEL] metagenome; soil
1763
1836
+
Cys
GCA
[ENA]
¢þ
>WENV180021476
FTEL01010089
[FTEL] metagenome; soil
1817
1887
+
Gly
GCC
[ENA]
¢þ
>WENV180021360
FTEL01001268
[FTEL] metagenome; soil
1861
1788
-
Asn
GTT
[ENA]
¢þ
>WENV180021479
FTEL01010516
[FTEL] metagenome; soil
1871
1790
-
Ser
AGA
[ENA]
¢þ
>WENV180021477
FTEL01010094
[FTEL] metagenome; soil
1905
1977
+
Gln
CTG
[ENA]
¢þ
>WENV180021454
FTEL01008859
[FTEL] metagenome; soil
1993
1920
-
Asn
GTT
[ENA]
¢þ
>WENV180021356
FTEL01000680
[FTEL] metagenome; soil
2167
2083
-
His
GTG
[ENA]
¢þ
>WENV180021436
FTEL01007258
[FTEL] metagenome; soil
2185
2112
-
Val
AAC
[ENA]
¢þ
>WENV180021387
FTEL01003010
[FTEL] metagenome; soil
2203
2130
-
Cys
GCA
[ENA]
¢þ
>WENV180021375
FTEL01002444
[FTEL] metagenome; soil
2253
2180
-
Cys
GCA
[ENA]
¢þ
>WENV180021399
FTEL01003505
[FTEL] metagenome; soil
2294
2224
-
Gly
GCC
[ENA]
¢þ
>WENV180021405
FTEL01003984
[FTEL] metagenome; soil
2345
2275
-
Gly
GCC
[ENA]
¢þ
>WENV180021428
FTEL01006447
[FTEL] metagenome; soil
2360
2290
-
Gly
GCC
[ENA]
¢þ
>WENV180021449
FTEL01008210
[FTEL] metagenome; soil
2455
2528
+
Arg
ACG
[ENA]
¢þ
>WENV180021354
FTEL01000531
[FTEL] metagenome; soil
2487
2560
+
Val
AAC
[ENA]
¢þ
>WENV180021411
FTEL01004602
[FTEL] metagenome; soil
2509
2439
-
Gly
GCC
[ENA]
¢þ
>WENV180021415
FTEL01004928
[FTEL] metagenome; soil
2572
2483
-
His
GTG
[ENA]
¢þ
>WENV180021433
FTEL01007157
[FTEL] metagenome; soil
2584
2664
+
Ser
CGA
[ENA]
¢þ
>WENV180021475
FTEL01010055
[FTEL] metagenome; soil
2660
2589
-
Thr
AGT
[ENA]
¢þ
>WENV180021377
FTEL01002456
[FTEL] metagenome; soil
2679
2750
+
Met
CAT
[ENA]
¢þ
>WENV180021371
FTEL01002089
[FTEL] metagenome; soil
2818
2745
-
Gly
TCC
[ENA]
¢þ
>WENV180021442
FTEL01007661
[FTEL] metagenome; soil
2863
2935
+
Gln
CTG
[ENA]
¢þ
>WENV180021408
FTEL01004215
[FTEL] metagenome; soil
2905
2833
-
Gln
CTG
[ENA]
¢þ
>WENV180021394
FTEL01003264
[FTEL] metagenome; soil
3016
3090
+
Thr
AGT
[ENA]
¢þ
>WENV180021391
FTEL01003248
[FTEL] metagenome; soil
3028
2957
-
Arg
ACG
[ENA]
¢þ
>WENV180021472
FTEL01009563
[FTEL] metagenome; soil
3094
3166
+
Gly
GCC
[ENA]
¢þ
>WENV180021443
FTEL01007661
[FTEL] metagenome; soil
3123
3194
+
Met
CAT
[ENA]
¢þ
>WENV180021480
FTEL01010749
[FTEL] metagenome; soil
3139
3066
-
Asn
GTT
[ENA]
¢þ
>WENV180021398
FTEL01003347
[FTEL] metagenome; soil
3335
3405
+
Gly
GCC
[ENA]
¢þ
>WENV180021393
FTEL01003263
[FTEL] metagenome; soil
3371
3290
-
Ser
AGA
[ENA]
¢þ
>WENV180021386
FTEL01002996
[FTEL] metagenome; soil
3522
3594
+
Trp
CCA
[ENA]
¢þ
>WENV180021440
FTEL01007613
[FTEL] metagenome; soil
3556
3631
+
Asn
GTT
[ENA]
¢þ
>WENV180021474
FTEL01010034
[FTEL] metagenome; soil
3601
3692
+
Glu
CTC
[ENA]
¢þ
>WENV180021421
FTEL01005739
[FTEL] metagenome; soil
3619
3692
+
Val
AAC
[ENA]
¢þ
>WENV180021416
FTEL01005061
[FTEL] metagenome; soil
3642
3723
+
Ser
AGA
[ENA]
¢þ
>WENV180021369
FTEL01002004
[FTEL] metagenome; soil
3643
3573
-
Gly
GCC
[ENA]
¢þ
>WENV180021430
FTEL01006937
[FTEL] metagenome; soil
3648
3578
-
Gly
GCC
[ENA]
¢þ
>WENV180021429
FTEL01006676
[FTEL] metagenome; soil
3769
3847
+
Val
AAC
[ENA]
¢þ
>WENV180021423
FTEL01005832
[FTEL] metagenome; soil
3811
3881
+
Gly
GCC
[ENA]
¢þ
>WENV180021389
FTEL01003051
[FTEL] metagenome; soil
3866
3795
-
Trp
CCA
[ENA]
¢þ
>WENV180021400
FTEL01003536
[FTEL] metagenome; soil
3946
3874
-
Cys
GCA
[ENA]
¢þ
>WENV180021397
FTEL01003337
[FTEL] metagenome; soil
3992
4063
+
Glu
TTC
[ENA]
¢þ
>WENV180021378
FTEL01002460
[FTEL] metagenome; soil
3994
4065
+
Arg
ACG
[ENA]
¢þ
>WENV180021426
FTEL01006162
[FTEL] metagenome; soil
4111
4038
-
Cys
GCA
[ENA]
¢þ
>WENV180021362
FTEL01001308
[FTEL] metagenome; soil
4126
4199
+
Val
AAC
[ENA]
¢þ
>WENV180021357
FTEL01000713
[FTEL] metagenome; soil
4176
4106
-
Gly
GCC
[ENA]
¢þ
>WENV180021481
FTEL01010759
[FTEL] metagenome; soil
4226
4151
-
Val
AAC
[ENA]
¢þ
>WENV180021363
FTEL01001308
[FTEL] metagenome; soil
4298
4379
+
Ser
CGA
[ENA]
¢þ
>WENV180021466
FTEL01009374
[FTEL] metagenome; soil
4673
4746
+
Val
AAC
[ENA]
¢þ
>WENV180021376
FTEL01002451
[FTEL] metagenome; soil
4916
4988
+
Trp
CCA
[ENA]
¢þ
>WENV180021434
FTEL01007157
[FTEL] metagenome; soil
4990
4915
-
Val
AAC
[ENA]
¢þ
>WENV180021381
FTEL01002732
[FTEL] metagenome; soil
4995
4922
-
Asn
GTT
[ENA]
¢þ
>WENV180021471
FTEL01009521
[FTEL] metagenome; soil
5012
4938
-
Trp
CCA
[ENA]
¢þ
>WENV180021379
FTEL01002671
[FTEL] metagenome; soil
5384
5314
-
Gly
GCC
[ENA]
¢þ
>WENV180021367
FTEL01001835
[FTEL] metagenome; soil
5750
5831
+
Ser
AGA
[ENA]
¢þ
>WENV180021385
FTEL01002910
[FTEL] metagenome; soil
5867
5940
+
Cys
GCA
[ENA]
¢þ
>WENV180021388
FTEL01003039
[FTEL] metagenome; soil
6251
6181
-
Gly
GCC
[ENA]
¢þ
>WENV180021383
FTEL01002841
[FTEL] metagenome; soil
6408
6336
-
Trp
CCA
[ENA]
¢þ
>WENV180021422
FTEL01005758
[FTEL] metagenome; soil
6420
6347
-
Val
AAC
[ENA]
¢þ
>WENV180021380
FTEL01002688
[FTEL] metagenome; soil
7046
6975
-
Thr
AGT
[ENA]
¢þ
>WENV180021382
FTEL01002748
[FTEL] metagenome; soil
7086
7015
-
Glu
TTC
[ENA]
¢þ
>WENV180021447
FTEL01007878
[FTEL] metagenome; soil
7106
7176
+
Gly
GCC
[ENA]
¢þ
>WENV180021374
FTEL01002425
[FTEL] metagenome; soil
7147
7228
+
Ser
AGA
[ENA]
¢þ
>WENV180021473
FTEL01009914
[FTEL] metagenome; soil
7164
7091
-
Val
AAC
[ENA]
¢þ
>WENV180021384
FTEL01002858
[FTEL] metagenome; soil
7390
7318
-
Gly
TCC
[ENA]
¢þ
>WENV180021427
FTEL01006221
[FTEL] metagenome; soil
7461
7532
+
Met
CAT
[ENA]
¢þ
>WENV180021392
FTEL01003251
[FTEL] metagenome; soil
7570
7640
+
Gly
GCC
[ENA]
¢þ
>WENV180021469
FTEL01009426
[FTEL] metagenome; soil
7969
7899
-
Gly
GCC
[ENA]
¢þ
>WENV180021407
FTEL01004092
[FTEL] metagenome; soil
8219
8291
+
Gly
TCC
[ENA]
¢þ
>WENV180021373
FTEL01002368
[FTEL] metagenome; soil
8419
8497
+
Arg
ACG
[ENA]
¢þ
>WENV180021437
FTEL01007428
[FTEL] metagenome; soil
8830
8746
-
Thr
AGT
[ENA]
¢þ
>WENV180021457
FTEL01008985
[FTEL] metagenome; soil
10204
10120
-
Asp
GTC
[ENA]
¢þ
>WENV180021478
FTEL01010474
[FTEL] metagenome; soil
10208
10283
+
Val
AAC
[ENA]
¢þ
>WENV180021431
FTEL01006989
[FTEL] metagenome; soil
10336
10406
+
Gly
GCC
[ENA]
¢þ
>WENV180021461
FTEL01009101
[FTEL] metagenome; soil
10416
10488
+
Gly
TCC
[ENA]
¢þ
>WENV180021432
FTEL01007113
[FTEL] metagenome; soil
10769
10696
-
Val
AAC
[ENA]
¢þ
>WENV180021460
FTEL01009054
[FTEL] metagenome; soil
11977
11906
-
Arg
ACG
[ENA]
¢þ
>WENV180021452
FTEL01008722
[FTEL] metagenome; soil
13408
13336
-
Gln
CTG
[ENA]
¢þ
>WENV180021424
FTEL01005870
[FTEL] metagenome; soil
14689
14760
+
Arg
ACG
[ENA]
¢þ
>WENV180021372
FTEL01002274
[FTEL] metagenome; soil
16187
16257
+
Gly
GCC
[ENA]
¢þ
>WENV180021465
FTEL01009256
[FTEL] metagenome; soil
20795
20719
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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