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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTEM] metagenome; soil
HIT:
55 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021492
FTEM01000508
[FTEM] metagenome; soil
3
79
+
Arg
CCG
[ENA]
¢þ
>WENV180021507
FTEM01001446
[FTEM] metagenome; soil
3
95
+
Ser
CGA
[ENA]
¢þ
>WENV180021512
FTEM01001580
[FTEM] metagenome; soil
11
85
+
Thr
TGT
[ENA]
¢þ
>WENV180021529
FTEM01002178
[FTEM] metagenome; soil
21
95
+
Gln
TTG
[ENA]
¢þ
>WENV180021510
FTEM01001509
[FTEM] metagenome; soil
23
98
+
Lys
CTT
[ENA]
¢þ
>WENV180021524
FTEM01001960
[FTEM] metagenome; soil
75
1
-
Asp
GTC
[ENA]
¢þ
>WENV180021521
FTEM01001934
[FTEM] metagenome; soil
79
5
-
Gln
TTG
[ENA]
¢þ
>WENV180021527
FTEM01002070
[FTEM] metagenome; soil
96
6
-
Ser
GCT
[ENA]
¢þ
>WENV180021503
FTEM01001259
[FTEM] metagenome; soil
122
49
-
Gly
CCC
[ENA]
¢þ
>WENV180021485
FTEM01000084
[FTEM] metagenome; soil
124
49
-
Thr
CGT
[ENA]
¢þ
>WENV180021501
FTEM01001172
[FTEM] metagenome; soil
157
233
+
Arg
ACG
[ENA]
¢þ
>WENV180021502
FTEM01001252
[FTEM] metagenome; soil
230
314
+
Leu
TAG
[ENA]
¢þ
>WENV180021488
FTEM01000397
[FTEM] metagenome; soil
321
397
+
Pro
TGG
[ENA]
¢þ
>WENV180021526
FTEM01002049
[FTEM] metagenome; soil
328
414
+
Leu
CAA
[ENA]
¢þ
>WENV180021484
FTEM01000017
[FTEM] metagenome; soil
346
431
+
Leu
CAG
[ENA]
¢þ
>WENV180021499
FTEM01000889
[FTEM] metagenome; soil
395
304
-
Ser
GGA
[ENA]
¢þ
>WENV180021489
FTEM01000397
[FTEM] metagenome; soil
764
840
+
Arg
TCT
[ENA]
¢þ
>WENV180021490
FTEM01000407
[FTEM] metagenome; soil
772
847
+
Ala
CGC
[ENA]
¢þ
>WENV180021493
FTEM01000570
[FTEM] metagenome; soil
816
892
+
Arg
TCT
[ENA]
¢þ
>WENV180021533
FTEM01002253
[FTEM] metagenome; soil
862
788
-
Val
GAC
[ENA]
¢þ
>WENV180021491
FTEM01000408
[FTEM] metagenome; soil
942
1031
+
Ser
CGA
[ENA]
¢þ
>WENV180021500
FTEM01001170
[FTEM] metagenome; soil
956
1031
+
Arg
CCT
[ENA]
¢þ
>WENV180021505
FTEM01001329
[FTEM] metagenome; soil
1045
1120
+
Ala
CGC
[ENA]
¢þ
>WENV180021487
FTEM01000113
[FTEM] metagenome; soil
1059
983
-
Pro
TGG
[ENA]
¢þ
>WENV180021530
FTEM01002181
[FTEM] metagenome; soil
1077
1004
-
Gln
CTG
[ENA]
¢þ
>WENV180021494
FTEM01000570
[FTEM] metagenome; soil
1081
1156
+
His
GTG
[ENA]
¢þ
>WENV180021495
FTEM01000570
[FTEM] metagenome; soil
1235
1309
+
Lys
CTT
[ENA]
¢þ
>WENV180021497
FTEM01000731
[FTEM] metagenome; soil
1246
1171
-
Thr
TGT
[ENA]
¢þ
>WENV180021498
FTEM01000756
[FTEM] metagenome; soil
1270
1195
-
Thr
CGT
[ENA]
¢þ
>WENV180021534
FTEM01002255
[FTEM] metagenome; soil
1349
1274
-
Gly
GCC
[ENA]
¢þ
>WENV180021525
FTEM01002026
[FTEM] metagenome; soil
1394
1320
-
Asn
GTT
[ENA]
¢þ
>WENV180021483
FTEM01000009
[FTEM] metagenome; soil
1421
1346
-
Trp
CCA
[ENA]
¢þ
>WENV180021486
FTEM01000093
[FTEM] metagenome; soil
1434
1509
+
Gly
GCC
[ENA]
¢þ
>WENV180021508
FTEM01001478
[FTEM] metagenome; soil
1772
1688
-
Leu
CAG
[ENA]
¢þ
>WENV180021531
FTEM01002187
[FTEM] metagenome; soil
1779
1855
+
Arg
TCG
[ENA]
¢þ
>WENV180021496
FTEM01000664
[FTEM] metagenome; soil
1797
1871
+
Val
CAC
[ENA]
¢þ
>WENV180021513
FTEM01001599
[FTEM] metagenome; soil
2310
2386
+
Arg
ACG
[ENA]
¢þ
>WENV180021520
FTEM01001891
[FTEM] metagenome; soil
2432
2358
-
Val
GAC
[ENA]
¢þ
>WENV180021511
FTEM01001573
[FTEM] metagenome; soil
2484
2568
+
Leu
GAG
[ENA]
¢þ
>WENV180021504
FTEM01001275
[FTEM] metagenome; soil
2704
2629
-
Ile2
CAT
[ENA]
¢þ
>WENV180021517
FTEM01001705
[FTEM] metagenome; soil
3751
3842
+
Ser
GGA
[ENA]
¢þ
>WENV180021506
FTEM01001401
[FTEM] metagenome; soil
4620
4695
+
Met
CAT
[ENA]
¢þ
>WENV180021523
FTEM01001958
[FTEM] metagenome; soil
5041
4966
-
Ala
GGC
[ENA]
¢þ
>WENV180021514
FTEM01001612
[FTEM] metagenome; soil
6020
5946
-
Gln
TTG
[ENA]
¢þ
>WENV180021515
FTEM01001677
[FTEM] metagenome; soil
6616
6542
-
Thr
TGT
[ENA]
¢þ
>WENV180021528
FTEM01002172
[FTEM] metagenome; soil
7818
7742
-
Asp
GTC
[ENA]
¢þ
>WENV180021522
FTEM01001958
[FTEM] metagenome; soil
9188
9262
+
Val
CAC
[ENA]
¢þ
>WENV180021535
FTEM01002328
[FTEM] metagenome; soil
9774
9860
+
Leu
CAA
[ENA]
¢þ
>WENV180021518
FTEM01001730
[FTEM] metagenome; soil
11084
10995
-
Ser
TGA
[ENA]
¢þ
>WENV180021516
FTEM01001692
[FTEM] metagenome; soil
13637
13713
+
Pro
CGG
[ENA]
¢þ
>WENV180021536
FTEM01002347
[FTEM] metagenome; soil
13719
13803
+
Leu
TAG
[ENA]
¢þ
>WENV180021519
FTEM01001873
[FTEM] metagenome; soil
20847
20772
-
Glu
CTC
[ENA]
¢þ
>WENV180021537
FTEM01002393
[FTEM] metagenome; soil
21844
21768
-
Arg
ACG
[ENA]
¢þ
>WENV180021532
FTEM01002197
[FTEM] metagenome; soil
23812
23888
+
Pro
TGG
[ENA]
¢þ
>WENV180021509
FTEM01001482
[FTEM] metagenome; soil
27322
27246
-
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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