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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FTER] metagenome; soil
HIT:
18 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021561
FTER01000063
[FTER] metagenome; soil
8
83
+
Gly
GCC
[ENA]
¢þ
>WENV180021571
FTER01001366
[FTER] metagenome; soil
47
136
+
Ser
TGA
[ENA]
¢þ
>WENV180021570
FTER01001049
[FTER] metagenome; soil
79
3
-
Arg
ACG
[ENA]
¢þ
>WENV180021567
FTER01000863
[FTER] metagenome; soil
116
190
+
Glu
CTC
[ENA]
¢þ
>WENV180021572
FTER01001925
[FTER] metagenome; soil
142
66
-
Met
CAT
[ENA]
¢þ
>WENV180021563
FTER01000324
[FTER] metagenome; soil
406
481
+
Gly
GCC
[ENA]
¢þ
>WENV180021575
FTER01002002
[FTER] metagenome; soil
440
513
+
Gln
CTG
[ENA]
¢þ
>WENV180021564
FTER01000324
[FTER] metagenome; soil
560
633
+
Cys
GCA
[ENA]
¢þ
>WENV180021566
FTER01000654
[FTER] metagenome; soil
955
882
-
Gln
CTG
[ENA]
¢þ
>WENV180021576
FTER01002038
[FTER] metagenome; soil
996
912
-
Leu
GAG
[ENA]
¢þ
>WENV180021565
FTER01000381
[FTER] metagenome; soil
1015
931
-
Leu
GAG
[ENA]
¢þ
>WENV180021573
FTER01001931
[FTER] metagenome; soil
1293
1220
-
Gly
CCC
[ENA]
¢þ
>WENV180021562
FTER01000225
[FTER] metagenome; soil
1306
1382
+
Arg
CCG
[ENA]
¢þ
>WENV180021577
FTER01002239
[FTER] metagenome; soil
1312
1235
-
Met
CAT
[ENA]
¢þ
>WENV180021568
FTER01000867
[FTER] metagenome; soil
1901
1974
+
Val
GAC
[ENA]
¢þ
>WENV180021569
FTER01000983
[FTER] metagenome; soil
2078
2162
+
Leu
TAG
[ENA]
¢þ
>WENV180021574
FTER01001959
[FTER] metagenome; soil
3564
3639
+
Arg
CCT
[ENA]
¢þ
>WENV180021578
FTER01002269
[FTER] metagenome; soil
4309
4384
+
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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