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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA gene List
[FTES] metagenome; soil
HIT:
11 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021582
FTES01000316
[FTES] metagenome; soil
2
91
+
Ser
GGA
[ENA]
¢þ
>WENV180021585
FTES01000564
[FTES] metagenome; soil
16
92
+
Met
CAT
[ENA]
¢þ
>WENV180021589
FTES01000684
[FTES] metagenome; soil
75
1
-
Trp
CCA
[ENA]
¢þ
>WENV180021583
FTES01000382
[FTES] metagenome; soil
92
6
-
Leu
CAG
[ENA]
¢þ
>WENV180021588
FTES01000639
[FTES] metagenome; soil
341
414
+
Gly
CCC
[ENA]
¢þ
>WENV180021586
FTES01000584
[FTES] metagenome; soil
804
728
-
Arg
CCT
[ENA]
¢þ
>WENV180021587
FTES01000602
[FTES] metagenome; soil
922
1011
+
Ser
CGA
[ENA]
¢þ
>WENV180021579
FTES01000042
[FTES] metagenome; soil
1282
1208
-
Val
CAC
[ENA]
¢þ
>WENV180021581
FTES01000179
[FTES] metagenome; soil
1360
1434
+
Val
CAC
[ENA]
¢þ
>WENV180021580
FTES01000043
[FTES] metagenome; soil
1878
1953
+
Phe
GAA
[ENA]
¢þ
>WENV180021584
FTES01000450
[FTES] metagenome; soil
2361
2445
+
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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