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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTEU] metagenome; soil
HIT:
13 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021594
FTEU01000140
[FTEU] metagenome; soil
7
96
+
Ser
GGA
[ENA]
¢þ
>WENV180021597
FTEU01000356
[FTEU] metagenome; soil
14
90
+
Pro
GGG
[ENA]
¢þ
>WENV180021598
FTEU01000427
[FTEU] metagenome; soil
25
101
+
Ile2
CAT
[ENA]
¢þ
>WENV180021605
FTEU01000710
[FTEU] metagenome; soil
489
575
+
Leu
TAA
[ENA]
¢þ
>WENV180021593
FTEU01000129
[FTEU] metagenome; soil
1118
1044
-
Glu
TTC
[ENA]
¢þ
>WENV180021601
FTEU01000509
[FTEU] metagenome; soil
1351
1275
-
Arg
TCT
[ENA]
¢þ
>WENV180021595
FTEU01000150
[FTEU] metagenome; soil
1633
1542
-
Ser
GCT
[ENA]
¢þ
>WENV180021596
FTEU01000166
[FTEU] metagenome; soil
2080
2007
-
Gln
TTG
[ENA]
¢þ
>WENV180021599
FTEU01000436
[FTEU] metagenome; soil
2184
2269
+
Leu
CAA
[ENA]
¢þ
>WENV180021603
FTEU01000628
[FTEU] metagenome; soil
3462
3388
-
Thr
GGT
[ENA]
¢þ
>WENV180021604
FTEU01000701
[FTEU] metagenome; soil
3494
3569
+
Thr
TGT
[ENA]
¢þ
>WENV180021602
FTEU01000622
[FTEU] metagenome; soil
3841
3930
+
Ser
TGA
[ENA]
¢þ
>WENV180021600
FTEU01000488
[FTEU] metagenome; soil
9503
9429
-
Val
CAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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