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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA gene List
[FTEV] metagenome; soil
HIT:
11 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021607
FTEV01000699
[FTEV] metagenome; soil
13
94
+
Leu
TAG
[ENA]
¢þ
>WENV180021609
FTEV01000738
[FTEV] metagenome; soil
23
99
+
Pro
TGG
[ENA]
¢þ
>WENV180021606
FTEV01000551
[FTEV] metagenome; soil
58
132
+
Gly
CCC
[ENA]
¢þ
>WENV180021613
FTEV01001143
[FTEV] metagenome; soil
73
-1
-
Pro
GGG
[ENA]
¢þ
>WENV180021616
FTEV01001736
[FTEV] metagenome; soil
676
758
+
Leu
TAG
[ENA]
¢þ
>WENV180021612
FTEV01001119
[FTEV] metagenome; soil
699
624
-
Lys
TTT
[ENA]
¢þ
>WENV180021608
FTEV01000704
[FTEV] metagenome; soil
1047
963
-
Leu
CAG
[ENA]
¢þ
>WENV180021611
FTEV01001115
[FTEV] metagenome; soil
1363
1287
-
Asp
GTC
[ENA]
¢þ
>WENV180021610
FTEV01000795
[FTEV] metagenome; soil
1642
1569
-
Cys
GCA
[ENA]
¢þ
>WENV180021615
FTEV01001447
[FTEV] metagenome; soil
2649
2576
-
Gln
CTG
[ENA]
¢þ
>WENV180021614
FTEV01001217
[FTEV] metagenome; soil
6402
6327
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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