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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTEY] metagenome; soil
HIT:
13 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021637
FTEY01000373
[FTEY] metagenome; soil
98
23
-
Ala
GGC
[ENA]
¢þ
>WENV180021641
FTEY01000496
[FTEY] metagenome; soil
721
637
-
Leu
GAG
[ENA]
¢þ
>WENV180021631
FTEY01000114
[FTEY] metagenome; soil
992
1067
+
Val
TAC
[ENA]
¢þ
>WENV180021642
FTEY01000530
[FTEY] metagenome; soil
995
1068
+
Ala
CGC
[ENA]
¢þ
>WENV180021630
FTEY01000044
[FTEY] metagenome; soil
1139
1063
-
Arg
CCG
[ENA]
¢þ
>WENV180021633
FTEY01000248
[FTEY] metagenome; soil
1303
1228
-
Thr
CGT
[ENA]
¢þ
>WENV180021632
FTEY01000203
[FTEY] metagenome; soil
1564
1489
-
Phe
GAA
[ENA]
¢þ
>WENV180021634
FTEY01000322
[FTEY] metagenome; soil
2288
2213
-
Trp
CCA
[ENA]
¢þ
>WENV180021636
FTEY01000348
[FTEY] metagenome; soil
3970
4045
+
Glu
TTC
[ENA]
¢þ
>WENV180021635
FTEY01000328
[FTEY] metagenome; soil
6315
6389
+
Gln
TTG
[ENA]
¢þ
>WENV180021638
FTEY01000374
[FTEY] metagenome; soil
7051
6977
-
Thr
TGT
[ENA]
¢þ
>WENV180021640
FTEY01000466
[FTEY] metagenome; soil
10062
9989
-
Gln
CTG
[ENA]
¢þ
>WENV180021639
FTEY01000454
[FTEY] metagenome; soil
16403
16328
-
Thr
CGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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