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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTEZ] metagenome; soil
HIT:
14 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021656
FTEZ01000412
[FTEZ] metagenome; soil
17
93
+
fMet
CAT
[ENA]
¢þ
>WENV180021651
FTEZ01000301
[FTEZ] metagenome; soil
18
94
+
Pro
GGG
[ENA]
¢þ
>WENV180021655
FTEZ01000389
[FTEZ] metagenome; soil
21
97
+
Arg
CCG
[ENA]
¢þ
>WENV180021643
FTEZ01000012
[FTEZ] metagenome; soil
660
735
+
Val
TAC
[ENA]
¢þ
>WENV180021647
FTEZ01000264
[FTEZ] metagenome; soil
787
862
+
Ala
GGC
[ENA]
¢þ
>WENV180021648
FTEZ01000264
[FTEZ] metagenome; soil
875
950
+
Glu
TTC
[ENA]
¢þ
>WENV180021644
FTEZ01000114
[FTEZ] metagenome; soil
1128
1053
-
Phe
GAA
[ENA]
¢þ
>WENV180021646
FTEZ01000215
[FTEZ] metagenome; soil
1886
1969
+
Leu
TAA
[ENA]
¢þ
>WENV180021653
FTEZ01000375
[FTEZ] metagenome; soil
3167
3091
-
Arg
CCG
[ENA]
¢þ
>WENV180021652
FTEZ01000304
[FTEZ] metagenome; soil
6238
6162
-
Arg
TCG
[ENA]
¢þ
>WENV180021645
FTEZ01000178
[FTEZ] metagenome; soil
6939
6863
-
Pro
GGG
[ENA]
¢þ
>WENV180021650
FTEZ01000274
[FTEZ] metagenome; soil
7087
7012
-
Glu
TTC
[ENA]
¢þ
>WENV180021649
FTEZ01000274
[FTEZ] metagenome; soil
7179
7104
-
Ala
GGC
[ENA]
¢þ
>WENV180021654
FTEZ01000377
[FTEZ] metagenome; soil
8346
8271
-
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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