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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTFB] metagenome; soil
HIT:
172 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021682
FTFB01002377
[FTFB] metagenome; soil
4
79
+
Arg
CCT
[ENA]
¢þ
>WENV180021692
FTFB01003751
[FTFB] metagenome; soil
8
94
+
Leu
CAG
[ENA]
¢þ
>WENV180021811
FTFB01010833
[FTFB] metagenome; soil
8
94
+
Leu
CAG
[ENA]
¢þ
>WENV180021826
FTFB01011671
[FTFB] metagenome; soil
9
99
+
Ser
GCT
[ENA]
¢þ
>WENV180021749
FTFB01007314
[FTFB] metagenome; soil
9
99
+
Ser
GCT
[ENA]
¢þ
>WENV180021667
FTFB01000669
[FTFB] metagenome; soil
12
87
+
Arg
CCT
[ENA]
¢þ
>WENV180021681
FTFB01002325
[FTFB] metagenome; soil
12
99
+
Ser
TGA
[ENA]
¢þ
>WENV180021704
FTFB01004485
[FTFB] metagenome; soil
18
94
+
Pro
CGG
[ENA]
¢þ
>WENV180021828
FTFB01011819
[FTFB] metagenome; soil
20
93
+
Gln
CTG
[ENA]
¢þ
>WENV180021700
FTFB01004249
[FTFB] metagenome; soil
20
94
+
Val
GAC
[ENA]
¢þ
>WENV180021803
FTFB01010114
[FTFB] metagenome; soil
20
95
+
Ala
CGC
[ENA]
¢þ
>WENV180021687
FTFB01003370
[FTFB] metagenome; soil
21
97
+
Arg
ACG
[ENA]
¢þ
>WENV180021663
FTFB01000221
[FTFB] metagenome; soil
21
97
+
Arg
ACG
[ENA]
¢þ
>WENV180021680
FTFB01002323
[FTFB] metagenome; soil
21
97
+
Pro
GGG
[ENA]
¢þ
>WENV180021743
FTFB01007021
[FTFB] metagenome; soil
22
97
+
Lys
TTT
[ENA]
¢þ
>WENV180021817
FTFB01011130
[FTFB] metagenome; soil
22
97
+
Asn
GTT
[ENA]
¢þ
>WENV180021673
FTFB01001340
[FTFB] metagenome; soil
22
99
+
Pro
GGG
[ENA]
¢þ
>WENV180021773
FTFB01008498
[FTFB] metagenome; soil
23
99
+
Pro
CGG
[ENA]
¢þ
>WENV180021746
FTFB01007115
[FTFB] metagenome; soil
24
99
+
Glu
CTC
[ENA]
¢þ
>WENV180021718
FTFB01005493
[FTFB] metagenome; soil
24
99
+
Ala
GGC
[ENA]
¢þ
>WENV180021734
FTFB01006738
[FTFB] metagenome; soil
24
99
+
Ala
CGC
[ENA]
¢þ
>WENV180021799
FTFB01009891
[FTFB] metagenome; soil
26
99
+
Cys
GCA
[ENA]
¢þ
>WENV180021675
FTFB01001805
[FTFB] metagenome; soil
42
117
+
Thr
TGT
[ENA]
¢þ
>WENV180021768
FTFB01008214
[FTFB] metagenome; soil
43
117
+
Val
GAC
[ENA]
¢þ
>WENV180021784
FTFB01009173
[FTFB] metagenome; soil
55
130
+
His
GTG
[ENA]
¢þ
>WENV180021668
FTFB01000791
[FTFB] metagenome; soil
56
132
+
Arg
TCG
[ENA]
¢þ
>WENV180021696
FTFB01004088
[FTFB] metagenome; soil
69
146
+
Met
CAT
[ENA]
¢þ
>WENV180021697
FTFB01004112
[FTFB] metagenome; soil
73
-1
-
fMet
CAT
[ENA]
¢þ
>WENV180021767
FTFB01008198
[FTFB] metagenome; soil
81
6
-
Arg
CCT
[ENA]
¢þ
>WENV180021824
FTFB01011451
[FTFB] metagenome; soil
87
12
-
Arg
CCT
[ENA]
¢þ
>WENV180021802
FTFB01010103
[FTFB] metagenome; soil
94
20
-
Val
CAC
[ENA]
¢þ
>WENV180021679
FTFB01002272
[FTFB] metagenome; soil
95
171
+
Arg
CCG
[ENA]
¢þ
>WENV180021775
FTFB01008884
[FTFB] metagenome; soil
96
20
-
Arg
ACG
[ENA]
¢þ
>WENV180021715
FTFB01005239
[FTFB] metagenome; soil
96
21
-
Ala
CGC
[ENA]
¢þ
>WENV180021713
FTFB01005162
[FTFB] metagenome; soil
97
22
-
Ala
GGC
[ENA]
¢þ
>WENV180021832
FTFB01011936
[FTFB] metagenome; soil
98
25
-
Cys
GCA
[ENA]
¢þ
>WENV180021661
FTFB01000037
[FTFB] metagenome; soil
103
27
-
Arg
CCG
[ENA]
¢þ
>WENV180021753
FTFB01007427
[FTFB] metagenome; soil
103
178
+
Glu
CTC
[ENA]
¢þ
>WENV180021754
FTFB01007507
[FTFB] metagenome; soil
104
29
-
Arg
CCT
[ENA]
¢þ
>WENV180021709
FTFB01004907
[FTFB] metagenome; soil
109
33
-
Met
CAT
[ENA]
¢þ
>WENV180021669
FTFB01000946
[FTFB] metagenome; soil
142
217
+
Arg
CCG
[ENA]
¢þ
>WENV180021789
FTFB01009401
[FTFB] metagenome; soil
146
236
+
Ser
CGA
[ENA]
¢þ
>WENV180021719
FTFB01005493
[FTFB] metagenome; soil
150
225
+
Glu
TTC
[ENA]
¢þ
>WENV180021747
FTFB01007157
[FTFB] metagenome; soil
166
91
-
Arg
CCT
[ENA]
¢þ
>WENV180021722
FTFB01005627
[FTFB] metagenome; soil
193
268
+
Lys
TTT
[ENA]
¢þ
>WENV180021755
FTFB01007527
[FTFB] metagenome; soil
211
301
+
Ser
GCT
[ENA]
¢þ
>WENV180021688
FTFB01003464
[FTFB] metagenome; soil
213
125
-
Ser
TGA
[ENA]
¢þ
>WENV180021711
FTFB01005028
[FTFB] metagenome; soil
239
164
-
Glu
TTC
[ENA]
¢þ
>WENV180021831
FTFB01011936
[FTFB] metagenome; soil
247
172
-
Gly
GCC
[ENA]
¢þ
>WENV180021783
FTFB01009172
[FTFB] metagenome; soil
283
209
-
Thr
GGT
[ENA]
¢þ
>WENV180021685
FTFB01003328
[FTFB] metagenome; soil
326
250
-
Pro
CGG
[ENA]
¢þ
>WENV180021757
FTFB01007624
[FTFB] metagenome; soil
329
254
-
Arg
CCT
[ENA]
¢þ
>WENV180021710
FTFB01005028
[FTFB] metagenome; soil
344
269
-
Ala
GGC
[ENA]
¢þ
>WENV180021763
FTFB01008100
[FTFB] metagenome; soil
352
263
-
Ser
TGA
[ENA]
¢þ
>WENV180021782
FTFB01009172
[FTFB] metagenome; soil
370
297
-
Gly
TCC
[ENA]
¢þ
>WENV180021756
FTFB01007535
[FTFB] metagenome; soil
386
313
-
Gly
CCC
[ENA]
¢þ
>WENV180021664
FTFB01000407
[FTFB] metagenome; soil
404
480
+
Arg
ACG
[ENA]
¢þ
>WENV180021689
FTFB01003525
[FTFB] metagenome; soil
426
500
+
His
GTG
[ENA]
¢þ
>WENV180021714
FTFB01005185
[FTFB] metagenome; soil
506
582
+
Arg
ACG
[ENA]
¢þ
>WENV180021781
FTFB01009172
[FTFB] metagenome; soil
531
447
-
Tyr
GTA
[ENA]
¢þ
>WENV180021818
FTFB01011325
[FTFB] metagenome; soil
541
617
+
Arg
TCG
[ENA]
¢þ
>WENV180021791
FTFB01009446
[FTFB] metagenome; soil
554
629
+
Thr
TGT
[ENA]
¢þ
>WENV180021739
FTFB01006839
[FTFB] metagenome; soil
574
651
+
Met
CAT
[ENA]
¢þ
>WENV180021671
FTFB01001030
[FTFB] metagenome; soil
583
507
-
Met
CAT
[ENA]
¢þ
>WENV180021785
FTFB01009173
[FTFB] metagenome; soil
612
687
+
Lys
CTT
[ENA]
¢þ
>WENV180021779
FTFB01009119
[FTFB] metagenome; soil
659
732
+
Cys
GCA
[ENA]
¢þ
>WENV180021761
FTFB01007934
[FTFB] metagenome; soil
665
590
-
Glu
TTC
[ENA]
¢þ
>WENV180021706
FTFB01004499
[FTFB] metagenome; soil
681
606
-
Glu
TTC
[ENA]
¢þ
>WENV180021683
FTFB01002377
[FTFB] metagenome; soil
749
824
+
Arg
CCT
[ENA]
¢þ
>WENV180021705
FTFB01004499
[FTFB] metagenome; soil
771
696
-
Ala
GGC
[ENA]
¢þ
>WENV180021760
FTFB01007934
[FTFB] metagenome; soil
773
698
-
Ala
GGC
[ENA]
¢þ
>WENV180021684
FTFB01002615
[FTFB] metagenome; soil
826
752
-
Met
CAT
[ENA]
¢þ
>WENV180021786
FTFB01009192
[FTFB] metagenome; soil
837
762
-
Thr
TGT
[ENA]
¢þ
>WENV180021691
FTFB01003694
[FTFB] metagenome; soil
899
825
-
Val
GAC
[ENA]
¢þ
>WENV180021798
FTFB01009865
[FTFB] metagenome; soil
914
987
+
Gly
CCC
[ENA]
¢þ
>WENV180021732
FTFB01006559
[FTFB] metagenome; soil
927
852
-
Lys
TTT
[ENA]
¢þ
>WENV180021814
FTFB01010958
[FTFB] metagenome; soil
1004
1078
+
Arg
CCG
[ENA]
¢þ
>WENV180021792
FTFB01009695
[FTFB] metagenome; soil
1007
1098
+
Ser
GGA
[ENA]
¢þ
>WENV180021752
FTFB01007373
[FTFB] metagenome; soil
1028
954
-
Val
CAC
[ENA]
¢þ
>WENV180021674
FTFB01001526
[FTFB] metagenome; soil
1038
963
-
Gly
GCC
[ENA]
¢þ
>WENV180021678
FTFB01002125
[FTFB] metagenome; soil
1091
1016
-
Asn
GTT
[ENA]
¢þ
>WENV180021702
FTFB01004475
[FTFB] metagenome; soil
1099
1024
-
Asn
GTT
[ENA]
¢þ
>WENV180021810
FTFB01010597
[FTFB] metagenome; soil
1114
1028
-
Leu
CAA
[ENA]
¢þ
>WENV180021666
FTFB01000615
[FTFB] metagenome; soil
1154
1078
-
fMet
CAT
[ENA]
¢þ
>WENV180021693
FTFB01003804
[FTFB] metagenome; soil
1169
1093
-
Val
CAC
[ENA]
¢þ
>WENV180021670
FTFB01000991
[FTFB] metagenome; soil
1234
1318
+
Leu
CAG
[ENA]
¢þ
>WENV180021686
FTFB01003341
[FTFB] metagenome; soil
1263
1187
-
fMet
CAT
[ENA]
¢þ
>WENV180021830
FTFB01011899
[FTFB] metagenome; soil
1305
1378
+
Gly
CCC
[ENA]
¢þ
>WENV180021676
FTFB01001841
[FTFB] metagenome; soil
1308
1234
-
Val
CAC
[ENA]
¢þ
>WENV180021765
FTFB01008176
[FTFB] metagenome; soil
1316
1224
-
Ser
CGA
[ENA]
¢þ
>WENV180021662
FTFB01000201
[FTFB] metagenome; soil
1401
1325
-
Arg
CCG
[ENA]
¢þ
>WENV180021672
FTFB01001275
[FTFB] metagenome; soil
1414
1330
-
Leu
TAA
[ENA]
¢þ
>WENV180021801
FTFB01010035
[FTFB] metagenome; soil
1446
1351
-
SeC
TCA
[ENA]
¢þ
>WENV180021733
FTFB01006729
[FTFB] metagenome; soil
1558
1482
-
fMet
CAT
[ENA]
¢þ
>WENV180021716
FTFB01005321
[FTFB] metagenome; soil
1601
1510
-
Ser
GGA
[ENA]
¢þ
>WENV180021690
FTFB01003647
[FTFB] metagenome; soil
1606
1531
-
Gly
GCC
[ENA]
¢þ
>WENV180021717
FTFB01005338
[FTFB] metagenome; soil
1679
1768
+
Ser
CGA
[ENA]
¢þ
>WENV180021738
FTFB01006837
[FTFB] metagenome; soil
1701
1625
-
Arg
ACG
[ENA]
¢þ
>WENV180021677
FTFB01002058
[FTFB] metagenome; soil
1702
1629
-
Cys
GCA
[ENA]
¢þ
>WENV180021794
FTFB01009706
[FTFB] metagenome; soil
1766
1691
-
Glu
TTC
[ENA]
¢þ
>WENV180021793
FTFB01009706
[FTFB] metagenome; soil
1888
1813
-
Ala
GGC
[ENA]
¢þ
>WENV180021726
FTFB01005868
[FTFB] metagenome; soil
1940
1867
-
Cys
GCA
[ENA]
¢þ
>WENV180021808
FTFB01010513
[FTFB] metagenome; soil
2017
1942
-
Phe
GAA
[ENA]
¢þ
>WENV180021698
FTFB01004209
[FTFB] metagenome; soil
2050
1974
-
Arg
TCG
[ENA]
¢þ
>WENV180021800
FTFB01010002
[FTFB] metagenome; soil
2107
2032
-
Thr
TGT
[ENA]
¢þ
>WENV180021766
FTFB01008178
[FTFB] metagenome; soil
2147
2061
-
Leu
CAA
[ENA]
¢þ
>WENV180021748
FTFB01007215
[FTFB] metagenome; soil
2241
2165
-
Pro
CGG
[ENA]
¢þ
>WENV180021665
FTFB01000436
[FTFB] metagenome; soil
2291
2367
+
Pro
TGG
[ENA]
¢þ
>WENV180021694
FTFB01004004
[FTFB] metagenome; soil
2402
2326
-
Pro
TGG
[ENA]
¢þ
>WENV180021776
FTFB01008954
[FTFB] metagenome; soil
2424
2348
-
Met
CAT
[ENA]
¢þ
>WENV180021721
FTFB01005567
[FTFB] metagenome; soil
2445
2528
+
Leu
CAA
[ENA]
¢þ
>WENV180021778
FTFB01009087
[FTFB] metagenome; soil
2522
2447
-
Gly
GCC
[ENA]
¢þ
>WENV180021745
FTFB01007099
[FTFB] metagenome; soil
2526
2451
-
Asn
GTT
[ENA]
¢þ
>WENV180021708
FTFB01004841
[FTFB] metagenome; soil
2548
2463
-
Leu
TAA
[ENA]
¢þ
>WENV180021797
FTFB01009783
[FTFB] metagenome; soil
2556
2482
-
Val
GAC
[ENA]
¢þ
>WENV180021819
FTFB01011326
[FTFB] metagenome; soil
2594
2519
-
Thr
CGT
[ENA]
¢þ
>WENV180021725
FTFB01005812
[FTFB] metagenome; soil
2645
2570
-
Glu
CTC
[ENA]
¢þ
>WENV180021736
FTFB01006793
[FTFB] metagenome; soil
2691
2766
+
Ala
GGC
[ENA]
¢þ
>WENV180021727
FTFB01005947
[FTFB] metagenome; soil
2725
2650
-
Thr
TGT
[ENA]
¢þ
>WENV180021787
FTFB01009221
[FTFB] metagenome; soil
2729
2819
+
Ser
GCT
[ENA]
¢þ
>WENV180021737
FTFB01006793
[FTFB] metagenome; soil
2776
2851
+
Glu
TTC
[ENA]
¢þ
>WENV180021823
FTFB01011404
[FTFB] metagenome; soil
2838
2763
-
Thr
CGT
[ENA]
¢þ
>WENV180021829
FTFB01011871
[FTFB] metagenome; soil
2839
2750
-
Ser
TGA
[ENA]
¢þ
>WENV180021699
FTFB01004239
[FTFB] metagenome; soil
2852
2779
-
Gly
TCC
[ENA]
¢þ
>WENV180021805
FTFB01010303
[FTFB] metagenome; soil
2905
2830
-
Lys
TTT
[ENA]
¢þ
>WENV180021777
FTFB01009045
[FTFB] metagenome; soil
2910
2824
-
Leu
CAG
[ENA]
¢þ
>WENV180021764
FTFB01008141
[FTFB] metagenome; soil
3015
3100
+
Leu
TAA
[ENA]
¢þ
>WENV180021703
FTFB01004484
[FTFB] metagenome; soil
3027
2952
-
Phe
GAA
[ENA]
¢þ
>WENV180021707
FTFB01004697
[FTFB] metagenome; soil
3178
3262
+
Leu
TAG
[ENA]
¢þ
>WENV180021772
FTFB01008454
[FTFB] metagenome; soil
3218
3293
+
Phe
GAA
[ENA]
¢þ
>WENV180021701
FTFB01004463
[FTFB] metagenome; soil
3252
3326
+
Gln
TTG
[ENA]
¢þ
>WENV180021728
FTFB01005948
[FTFB] metagenome; soil
3267
3191
-
Asp
GTC
[ENA]
¢þ
>WENV180021762
FTFB01008043
[FTFB] metagenome; soil
3310
3236
-
Val
GAC
[ENA]
¢þ
>WENV180021769
FTFB01008226
[FTFB] metagenome; soil
3379
3453
+
Val
CAC
[ENA]
¢þ
>WENV180021742
FTFB01006985
[FTFB] metagenome; soil
3403
3326
-
Asn
GTT
[ENA]
¢þ
>WENV180021815
FTFB01011022
[FTFB] metagenome; soil
3459
3534
+
Arg
CCT
[ENA]
¢þ
>WENV180021816
FTFB01011032
[FTFB] metagenome; soil
3466
3392
-
Val
GAC
[ENA]
¢þ
>WENV180021771
FTFB01008283
[FTFB] metagenome; soil
3530
3604
+
Ala
CGC
[ENA]
¢þ
>WENV180021796
FTFB01009724
[FTFB] metagenome; soil
3561
3635
+
Val
CAC
[ENA]
¢þ
>WENV180021730
FTFB01006139
[FTFB] metagenome; soil
3583
3508
-
Arg
CCT
[ENA]
¢þ
>WENV180021825
FTFB01011584
[FTFB] metagenome; soil
3601
3527
-
Val
GAC
[ENA]
¢þ
>WENV180021790
FTFB01009424
[FTFB] metagenome; soil
3647
3571
-
Arg
ACG
[ENA]
¢þ
>WENV180021724
FTFB01005780
[FTFB] metagenome; soil
3787
3860
+
Cys
GCA
[ENA]
¢þ
>WENV180021729
FTFB01006007
[FTFB] metagenome; soil
3924
3999
+
Asn
GTT
[ENA]
¢þ
>WENV180021822
FTFB01011375
[FTFB] metagenome; soil
4052
3977
-
His
GTG
[ENA]
¢þ
>WENV180021827
FTFB01011786
[FTFB] metagenome; soil
4122
4037
-
Leu
TAA
[ENA]
¢þ
>WENV180021821
FTFB01011375
[FTFB] metagenome; soil
4364
4288
-
Arg
TCT
[ENA]
¢þ
>WENV180021820
FTFB01011375
[FTFB] metagenome; soil
4570
4494
-
Pro
TGG
[ENA]
¢þ
>WENV180021744
FTFB01007073
[FTFB] metagenome; soil
4691
4615
-
Arg
TCG
[ENA]
¢þ
>WENV180021723
FTFB01005744
[FTFB] metagenome; soil
4996
4907
-
Ser
CGA
[ENA]
¢þ
>WENV180021751
FTFB01007360
[FTFB] metagenome; soil
5010
5085
+
Thr
CGT
[ENA]
¢þ
>WENV180021774
FTFB01008511
[FTFB] metagenome; soil
5144
5218
+
Val
CAC
[ENA]
¢þ
>WENV180021759
FTFB01007690
[FTFB] metagenome; soil
5188
5101
-
Leu
TAA
[ENA]
¢þ
>WENV180021695
FTFB01004063
[FTFB] metagenome; soil
5198
5113
-
Leu
CAG
[ENA]
¢þ
>WENV180021795
FTFB01009717
[FTFB] metagenome; soil
5304
5378
+
Val
CAC
[ENA]
¢þ
>WENV180021735
FTFB01006789
[FTFB] metagenome; soil
5425
5336
-
Ser
GGA
[ENA]
¢þ
>WENV180021788
FTFB01009384
[FTFB] metagenome; soil
5612
5686
+
Val
CAC
[ENA]
¢þ
>WENV180021770
FTFB01008230
[FTFB] metagenome; soil
5770
5854
+
Leu
TAG
[ENA]
¢þ
>WENV180021712
FTFB01005122
[FTFB] metagenome; soil
6496
6580
+
Leu
TAG
[ENA]
¢þ
>WENV180021806
FTFB01010352
[FTFB] metagenome; soil
6539
6449
-
Ser
CGA
[ENA]
¢þ
>WENV180021750
FTFB01007356
[FTFB] metagenome; soil
7028
7104
+
Arg
TCT
[ENA]
¢þ
>WENV180021807
FTFB01010490
[FTFB] metagenome; soil
7379
7452
+
Cys
GCA
[ENA]
¢þ
>WENV180021731
FTFB01006179
[FTFB] metagenome; soil
7652
7577
-
Phe
GAA
[ENA]
¢þ
>WENV180021812
FTFB01010934
[FTFB] metagenome; soil
9251
9326
+
Ala
GGC
[ENA]
¢þ
>WENV180021741
FTFB01006918
[FTFB] metagenome; soil
9310
9235
-
Glu
TTC
[ENA]
¢þ
>WENV180021813
FTFB01010934
[FTFB] metagenome; soil
9349
9424
+
Glu
TTC
[ENA]
¢þ
>WENV180021740
FTFB01006918
[FTFB] metagenome; soil
9399
9324
-
Ala
GGC
[ENA]
¢þ
>WENV180021720
FTFB01005565
[FTFB] metagenome; soil
10864
10787
-
Met
CAT
[ENA]
¢þ
>WENV180021809
FTFB01010571
[FTFB] metagenome; soil
11574
11649
+
Thr
CGT
[ENA]
¢þ
>WENV180021780
FTFB01009172
[FTFB] metagenome; soil
12750
12677
-
Thr
TGT
[ENA]
¢þ
>WENV180021804
FTFB01010163
[FTFB] metagenome; soil
13007
12917
-
Ser
GCT
[ENA]
¢þ
>WENV180021758
FTFB01007689
[FTFB] metagenome; soil
17552
17462
-
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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