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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTFC] metagenome; soil
HIT:
63 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021877
FTFC01005330
[FTFC] metagenome; soil
2
77
+
Glu
CTC
[ENA]
¢þ
>WENV180021883
FTFC01005882
[FTFC] metagenome; soil
4
80
+
Pro
TGG
[ENA]
¢þ
>WENV180021885
FTFC01005974
[FTFC] metagenome; soil
5
80
+
His
GTG
[ENA]
¢þ
>WENV180021852
FTFC01002353
[FTFC] metagenome; soil
10
84
+
Val
GAC
[ENA]
¢þ
>WENV180021863
FTFC01003081
[FTFC] metagenome; soil
12
86
+
Gly
GCC
[ENA]
¢þ
>WENV180021865
FTFC01003224
[FTFC] metagenome; soil
15
99
+
Leu
GAG
[ENA]
¢þ
>WENV180021850
FTFC01002320
[FTFC] metagenome; soil
19
94
+
Phe
GAA
[ENA]
¢þ
>WENV180021833
FTFC01000103
[FTFC] metagenome; soil
21
110
+
Ser
TGA
[ENA]
¢þ
>WENV180021881
FTFC01005797
[FTFC] metagenome; soil
23
97
+
Glu
TTC
[ENA]
¢þ
>WENV180021836
FTFC01000929
[FTFC] metagenome; soil
23
99
+
Arg
TCG
[ENA]
¢þ
>WENV180021888
FTFC01006029
[FTFC] metagenome; soil
23
99
+
Met
CAT
[ENA]
¢þ
>WENV180021874
FTFC01005025
[FTFC] metagenome; soil
33
108
+
Ala
CGC
[ENA]
¢þ
>WENV180021892
FTFC01006498
[FTFC] metagenome; soil
71
-1
-
Glu
TTC
[ENA]
¢þ
>WENV180021835
FTFC01000742
[FTFC] metagenome; soil
75
-1
-
Arg
ACG
[ENA]
¢þ
>WENV180021864
FTFC01003140
[FTFC] metagenome; soil
80
156
+
Asp
GTC
[ENA]
¢þ
>WENV180021844
FTFC01001897
[FTFC] metagenome; soil
89
15
-
Thr
TGT
[ENA]
¢þ
>WENV180021886
FTFC01005974
[FTFC] metagenome; soil
95
170
+
Lys
CTT
[ENA]
¢þ
>WENV180021855
FTFC01002498
[FTFC] metagenome; soil
97
182
+
Leu
TAA
[ENA]
¢þ
>WENV180021841
FTFC01001713
[FTFC] metagenome; soil
106
198
+
Ser
GGA
[ENA]
¢þ
>WENV180021859
FTFC01002745
[FTFC] metagenome; soil
129
203
+
Thr
TGT
[ENA]
¢þ
>WENV180021839
FTFC01001465
[FTFC] metagenome; soil
138
63
-
Val
TAC
[ENA]
¢þ
>WENV180021846
FTFC01001937
[FTFC] metagenome; soil
138
211
+
Gly
CCC
[ENA]
¢þ
>WENV180021891
FTFC01006447
[FTFC] metagenome; soil
175
101
-
Gly
CCC
[ENA]
¢þ
>WENV180021843
FTFC01001861
[FTFC] metagenome; soil
178
254
+
Pro
GGG
[ENA]
¢þ
>WENV180021890
FTFC01006326
[FTFC] metagenome; soil
182
258
+
Arg
CCT
[ENA]
¢þ
>WENV180021872
FTFC01004669
[FTFC] metagenome; soil
189
103
-
Leu
TAA
[ENA]
¢þ
>WENV180021870
FTFC01004000
[FTFC] metagenome; soil
259
183
-
Arg
TCT
[ENA]
¢þ
>WENV180021867
FTFC01003392
[FTFC] metagenome; soil
297
372
+
Val
TAC
[ENA]
¢þ
>WENV180021845
FTFC01001898
[FTFC] metagenome; soil
307
381
+
Gln
TTG
[ENA]
¢þ
>WENV180021878
FTFC01005586
[FTFC] metagenome; soil
313
387
+
Lys
TTT
[ENA]
¢þ
>WENV180021856
FTFC01002509
[FTFC] metagenome; soil
551
626
+
Ala
CGC
[ENA]
¢þ
>WENV180021889
FTFC01006135
[FTFC] metagenome; soil
570
494
-
Arg
CCT
[ENA]
¢þ
>WENV180021861
FTFC01002999
[FTFC] metagenome; soil
573
647
+
Thr
GGT
[ENA]
¢þ
>WENV180021873
FTFC01004697
[FTFC] metagenome; soil
584
510
-
Glu
CTC
[ENA]
¢þ
>WENV180021862
FTFC01003015
[FTFC] metagenome; soil
616
691
+
Phe
GAA
[ENA]
¢þ
>WENV180021871
FTFC01004591
[FTFC] metagenome; soil
631
545
-
Leu
CAA
[ENA]
¢þ
>WENV180021847
FTFC01002247
[FTFC] metagenome; soil
722
648
-
Val
CAC
[ENA]
¢þ
>WENV180021868
FTFC01003805
[FTFC] metagenome; soil
744
819
+
Glu
CTC
[ENA]
¢þ
>WENV180021880
FTFC01005690
[FTFC] metagenome; soil
754
830
+
Pro
CGG
[ENA]
¢þ
>WENV180021837
FTFC01000966
[FTFC] metagenome; soil
991
916
-
Asn
GTT
[ENA]
¢þ
>WENV180021840
FTFC01001604
[FTFC] metagenome; soil
1007
931
-
Pro
CGG
[ENA]
¢þ
>WENV180021876
FTFC01005305
[FTFC] metagenome; soil
1036
961
-
Thr
TGT
[ENA]
¢þ
>WENV180021869
FTFC01004000
[FTFC] metagenome; soil
1084
1008
-
Pro
TGG
[ENA]
¢þ
>WENV180021884
FTFC01005882
[FTFC] metagenome; soil
1122
1198
+
Arg
TCT
[ENA]
¢þ
>WENV180021854
FTFC01002492
[FTFC] metagenome; soil
1123
1048
-
Phe
GAA
[ENA]
¢þ
>WENV180021834
FTFC01000656
[FTFC] metagenome; soil
1205
1278
+
Cys
GCA
[ENA]
¢þ
>WENV180021853
FTFC01002379
[FTFC] metagenome; soil
1231
1155
-
Pro
GGG
[ENA]
¢þ
>WENV180021838
FTFC01001404
[FTFC] metagenome; soil
1256
1181
-
Glu
TTC
[ENA]
¢þ
>WENV180021875
FTFC01005193
[FTFC] metagenome; soil
1262
1186
-
Arg
ACG
[ENA]
¢þ
>WENV180021893
FTFC01006516
[FTFC] metagenome; soil
1317
1390
+
Thr
GGT
[ENA]
¢þ
>WENV180021879
FTFC01005670
[FTFC] metagenome; soil
1385
1311
-
Val
CAC
[ENA]
¢þ
>WENV180021857
FTFC01002553
[FTFC] metagenome; soil
1490
1566
+
Gly
GCC
[ENA]
¢þ
>WENV180021858
FTFC01002553
[FTFC] metagenome; soil
1574
1662
+
Tyr
GTA
[ENA]
¢þ
>WENV180021895
FTFC01006801
[FTFC] metagenome; soil
1584
1660
+
Arg
CCG
[ENA]
¢þ
>WENV180021842
FTFC01001822
[FTFC] metagenome; soil
1852
1778
-
Val
CAC
[ENA]
¢þ
>WENV180021848
FTFC01002283
[FTFC] metagenome; soil
1945
1872
-
Gln
TTG
[ENA]
¢þ
>WENV180021860
FTFC01002894
[FTFC] metagenome; soil
2004
1929
-
Thr
CGT
[ENA]
¢þ
>WENV180021849
FTFC01002286
[FTFC] metagenome; soil
2186
2097
-
Ser
TGA
[ENA]
¢þ
>WENV180021851
FTFC01002338
[FTFC] metagenome; soil
2361
2445
+
Leu
TAG
[ENA]
¢þ
>WENV180021866
FTFC01003284
[FTFC] metagenome; soil
2385
2299
-
Leu
CAG
[ENA]
¢þ
>WENV180021882
FTFC01005797
[FTFC] metagenome; soil
2530
2606
+
Pro
TGG
[ENA]
¢þ
>WENV180021894
FTFC01006700
[FTFC] metagenome; soil
3817
3728
-
Ser
TGA
[ENA]
¢þ
>WENV180021887
FTFC01006020
[FTFC] metagenome; soil
9926
9852
-
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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