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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTFF] metagenome; soil
HIT:
43 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021923
FTFF01000396
[FTFF] metagenome; soil
9
83
+
Val
TAC
[ENA]
¢þ
>WENV180021956
FTFF01001091
[FTFF] metagenome; soil
25
99
+
Met
CAT
[ENA]
¢þ
>WENV180021948
FTFF01000855
[FTFF] metagenome; soil
80
5
-
Thr
GGT
[ENA]
¢þ
>WENV180021954
FTFF01001065
[FTFF] metagenome; soil
91
17
-
Val
TAC
[ENA]
¢þ
>WENV180021918
FTFF01000180
[FTFF] metagenome; soil
102
27
-
His
GTG
[ENA]
¢þ
>WENV180021950
FTFF01000909
[FTFF] metagenome; soil
130
47
-
Leu
CAA
[ENA]
¢þ
>WENV180021947
FTFF01000855
[FTFF] metagenome; soil
168
95
-
Gly
TCC
[ENA]
¢þ
>WENV180021946
FTFF01000855
[FTFF] metagenome; soil
352
269
-
Tyr
GTA
[ENA]
¢þ
>WENV180021922
FTFF01000269
[FTFF] metagenome; soil
374
302
-
Glu
CTC
[ENA]
¢þ
>WENV180021920
FTFF01000235
[FTFF] metagenome; soil
388
315
-
Lys
TTT
[ENA]
¢þ
>WENV180021921
FTFF01000269
[FTFF] metagenome; soil
465
391
-
Gln
CTG
[ENA]
¢þ
>WENV180021932
FTFF01000760
[FTFF] metagenome; soil
498
572
+
Arg
TCG
[ENA]
¢þ
>WENV180021927
FTFF01000698
[FTFF] metagenome; soil
512
438
-
Val
CAC
[ENA]
¢þ
>WENV180021958
FTFF01001291
[FTFF] metagenome; soil
549
472
-
Arg
CCG
[ENA]
¢þ
>WENV180021926
FTFF01000602
[FTFF] metagenome; soil
551
476
-
Pro
GGG
[ENA]
¢þ
>WENV180021945
FTFF01000855
[FTFF] metagenome; soil
554
481
-
Thr
TGT
[ENA]
¢þ
>WENV180021952
FTFF01000976
[FTFF] metagenome; soil
897
815
-
Leu
GAG
[ENA]
¢þ
>WENV180021951
FTFF01000962
[FTFF] metagenome; soil
1112
1025
-
Leu
TAA
[ENA]
¢þ
>WENV180021957
FTFF01001134
[FTFF] metagenome; soil
1121
1039
-
Leu
TAG
[ENA]
¢þ
>WENV180021919
FTFF01000210
[FTFF] metagenome; soil
1479
1555
+
fMet
CAT
[ENA]
¢þ
>WENV180021960
FTFF01001430
[FTFF] metagenome; soil
1783
1711
-
Gln
TTG
[ENA]
¢þ
>WENV180021930
FTFF01000722
[FTFF] metagenome; soil
2652
2578
-
Ala
CGC
[ENA]
¢þ
>WENV180021929
FTFF01000714
[FTFF] metagenome; soil
2751
2677
-
Ala
GGC
[ENA]
¢þ
>WENV180021959
FTFF01001364
[FTFF] metagenome; soil
2905
2832
-
Gly
CCC
[ENA]
¢þ
>WENV180021924
FTFF01000427
[FTFF] metagenome; soil
2919
2994
+
Ile2
CAT
[ENA]
¢þ
>WENV180021931
FTFF01000741
[FTFF] metagenome; soil
3829
3903
+
Lys
CTT
[ENA]
¢þ
>WENV180021949
FTFF01000863
[FTFF] metagenome; soil
5192
5117
-
Pro
TGG
[ENA]
¢þ
>WENV180021943
FTFF01000832
[FTFF] metagenome; soil
5253
5166
-
Ser
GGA
[ENA]
¢þ
>WENV180021942
FTFF01000832
[FTFF] metagenome; soil
5440
5349
-
Ser
CGA
[ENA]
¢þ
>WENV180021941
FTFF01000832
[FTFF] metagenome; soil
6016
5941
-
Arg
ACG
[ENA]
¢þ
>WENV180021940
FTFF01000832
[FTFF] metagenome; soil
6152
6062
-
Ser
GCT
[ENA]
¢þ
>WENV180021939
FTFF01000832
[FTFF] metagenome; soil
6472
6388
-
Ser
TGA
[ENA]
¢þ
>WENV180021934
FTFF01000832
[FTFF] metagenome; soil
7465
7549
+
Ser
TGA
[ENA]
¢þ
>WENV180021925
FTFF01000522
[FTFF] metagenome; soil
7564
7640
+
Pro
CGG
[ENA]
¢þ
>WENV180021935
FTFF01000832
[FTFF] metagenome; soil
7785
7875
+
Ser
GCT
[ENA]
¢þ
>WENV180021953
FTFF01001065
[FTFF] metagenome; soil
7848
7922
+
Val
TAC
[ENA]
¢þ
>WENV180021936
FTFF01000832
[FTFF] metagenome; soil
7921
7996
+
Arg
ACG
[ENA]
¢þ
>WENV180021933
FTFF01000764
[FTFF] metagenome; soil
8140
8225
+
Leu
CAG
[ENA]
¢þ
>WENV180021937
FTFF01000832
[FTFF] metagenome; soil
8497
8588
+
Ser
CGA
[ENA]
¢þ
>WENV180021938
FTFF01000832
[FTFF] metagenome; soil
8684
8771
+
Ser
GGA
[ENA]
¢þ
>WENV180021955
FTFF01001088
[FTFF] metagenome; soil
8698
8770
+
Val
GAC
[ENA]
¢þ
>WENV180021944
FTFF01000836
[FTFF] metagenome; soil
8945
9019
+
Phe
GAA
[ENA]
¢þ
>WENV180021928
FTFF01000714
[FTFF] metagenome; soil
16404
16478
+
Ala
GGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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