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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[FTFH] metagenome; soil
HIT:
53 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180021982
FTFH01001336
[FTFH] metagenome; soil
2
92
+
Ser
GCT
[ENA]
¢þ
>WENV180021998
FTFH01001683
[FTFH] metagenome; soil
10
84
+
Val
GAC
[ENA]
¢þ
>WENV180021983
FTFH01001356
[FTFH] metagenome; soil
22
98
+
Pro
CGG
[ENA]
¢þ
>WENV180021984
FTFH01001461
[FTFH] metagenome; soil
24
97
+
Gly
TCC
[ENA]
¢þ
>WENV180021969
FTFH01000386
[FTFH] metagenome; soil
90
1
-
Ser
CGA
[ENA]
¢þ
>WENV180022012
FTFH01002183
[FTFH] metagenome; soil
91
4
-
Leu
CAA
[ENA]
¢þ
>WENV180021972
FTFH01000458
[FTFH] metagenome; soil
96
20
-
Met
CAT
[ENA]
¢þ
>WENV180022013
FTFH01002356
[FTFH] metagenome; soil
103
178
+
Glu
CTC
[ENA]
¢þ
>WENV180021985
FTFH01001461
[FTFH] metagenome; soil
105
189
+
Asn
GTT
[ENA]
¢þ
>WENV180021963
FTFH01000186
[FTFH] metagenome; soil
191
105
-
Leu
TAA
[ENA]
¢þ
>WENV180021971
FTFH01000421
[FTFH] metagenome; soil
242
166
-
Arg
TCT
[ENA]
¢þ
>WENV180021968
FTFH01000372
[FTFH] metagenome; soil
266
191
-
Thr
GGT
[ENA]
¢þ
>WENV180021979
FTFH01001166
[FTFH] metagenome; soil
274
190
-
Leu
CAG
[ENA]
¢þ
>WENV180021964
FTFH01000334
[FTFH] metagenome; soil
307
394
+
Ser
TGA
[ENA]
¢þ
>WENV180021975
FTFH01000583
[FTFH] metagenome; soil
347
271
-
Asp
GTC
[ENA]
¢þ
>WENV180021965
FTFH01000343
[FTFH] metagenome; soil
360
435
+
Thr
CGT
[ENA]
¢þ
>WENV180021962
FTFH01000102
[FTFH] metagenome; soil
370
445
+
Ala
CGC
[ENA]
¢þ
>WENV180021967
FTFH01000372
[FTFH] metagenome; soil
403
330
-
Gly
TCC
[ENA]
¢þ
>WENV180021974
FTFH01000583
[FTFH] metagenome; soil
502
428
-
Val
TAC
[ENA]
¢þ
>WENV180021966
FTFH01000372
[FTFH] metagenome; soil
601
516
-
Tyr
GTA
[ENA]
¢þ
>WENV180021977
FTFH01000842
[FTFH] metagenome; soil
621
539
-
Leu
GAG
[ENA]
¢þ
>WENV180021973
FTFH01000575
[FTFH] metagenome; soil
855
940
+
Leu
CAG
[ENA]
¢þ
>WENV180021976
FTFH01000827
[FTFH] metagenome; soil
929
1004
+
Ala
CGC
[ENA]
¢þ
>WENV180021986
FTFH01001461
[FTFH] metagenome; soil
1058
1132
+
Glu
TTC
[ENA]
¢þ
>WENV180021987
FTFH01001461
[FTFH] metagenome; soil
1139
1214
+
Leu
TAG
[ENA]
¢þ
>WENV180021988
FTFH01001461
[FTFH] metagenome; soil
1221
1297
+
His
GTG
[ENA]
¢þ
>WENV180021989
FTFH01001461
[FTFH] metagenome; soil
1303
1376
+
Cys
GCA
[ENA]
¢þ
>WENV180022001
FTFH01001765
[FTFH] metagenome; soil
1330
1256
-
Asn
GTT
[ENA]
¢þ
>WENV180021990
FTFH01001461
[FTFH] metagenome; soil
1383
1457
+
Pro
TGG
[ENA]
¢þ
>WENV180021995
FTFH01001500
[FTFH] metagenome; soil
1465
1389
-
Arg
CCT
[ENA]
¢þ
>WENV180021996
FTFH01001604
[FTFH] metagenome; soil
1692
1617
-
Thr
TGT
[ENA]
¢þ
>WENV180021961
FTFH01000010
[FTFH] metagenome; soil
1705
1630
-
Phe
GAA
[ENA]
¢þ
>WENV180022003
FTFH01001799
[FTFH] metagenome; soil
1753
1680
-
Cys
GCA
[ENA]
¢þ
>WENV180021991
FTFH01001461
[FTFH] metagenome; soil
1777
1856
+
Leu
CAA
[ENA]
¢þ
>WENV180021997
FTFH01001682
[FTFH] metagenome; soil
1856
1931
+
Lys
TTT
[ENA]
¢þ
>WENV180021970
FTFH01000411
[FTFH] metagenome; soil
1884
1810
-
Gln
TTG
[ENA]
¢þ
>WENV180022002
FTFH01001799
[FTFH] metagenome; soil
1926
1851
-
Gly
GCC
[ENA]
¢þ
>WENV180022005
FTFH01001832
[FTFH] metagenome; soil
1983
2059
+
Pro
CGG
[ENA]
¢þ
>WENV180021992
FTFH01001461
[FTFH] metagenome; soil
2036
2110
+
Met
CAT
[ENA]
¢þ
>WENV180022008
FTFH01001994
[FTFH] metagenome; soil
2051
2124
+
Gln
CTG
[ENA]
¢þ
>WENV180021978
FTFH01000860
[FTFH] metagenome; soil
2058
1974
-
Leu
GAG
[ENA]
¢þ
>WENV180021993
FTFH01001461
[FTFH] metagenome; soil
2117
2193
+
Met
CAT
[ENA]
¢þ
>WENV180021981
FTFH01001290
[FTFH] metagenome; soil
2319
2394
+
Ile2
CAT
[ENA]
¢þ
>WENV180022004
FTFH01001807
[FTFH] metagenome; soil
2609
2525
-
Leu
TAG
[ENA]
¢þ
>WENV180021994
FTFH01001461
[FTFH] metagenome; soil
2708
2793
+
Lys
TTT
[ENA]
¢þ
>WENV180022006
FTFH01001838
[FTFH] metagenome; soil
3117
3188
+
Val
GAC
[ENA]
¢þ
>WENV180021980
FTFH01001282
[FTFH] metagenome; soil
3306
3231
-
Ala
CGC
[ENA]
¢þ
>WENV180022009
FTFH01002002
[FTFH] metagenome; soil
3559
3484
-
Phe
GAA
[ENA]
¢þ
>WENV180022010
FTFH01002085
[FTFH] metagenome; soil
4701
4612
-
Ser
TGA
[ENA]
¢þ
>WENV180022007
FTFH01001842
[FTFH] metagenome; soil
5473
5397
-
Arg
CCG
[ENA]
¢þ
>WENV180022000
FTFH01001739
[FTFH] metagenome; soil
7600
7674
+
Val
CAC
[ENA]
¢þ
>WENV180021999
FTFH01001683
[FTFH] metagenome; soil
7873
7949
+
Pro
GGG
[ENA]
¢þ
>WENV180022011
FTFH01002101
[FTFH] metagenome; soil
10435
10362
-
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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