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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTFM] metagenome; soil
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022034
FTFM01000098
[FTFM] metagenome; soil
4
88
+
Leu
TAG
[ENA]
¢þ
>WENV180022064
FTFM01000680
[FTFM] metagenome; soil
6
82
+
Pro
GGG
[ENA]
¢þ
>WENV180022057
FTFM01000530
[FTFM] metagenome; soil
9
98
+
Ser
GGA
[ENA]
¢þ
>WENV180022031
FTFM01000077
[FTFM] metagenome; soil
24
98
+
Glu
TTC
[ENA]
¢þ
>WENV180022069
FTFM01000772
[FTFM] metagenome; soil
24
98
+
Val
GAC
[ENA]
¢þ
>WENV180022062
FTFM01000608
[FTFM] metagenome; soil
24
99
+
Ala
CGC
[ENA]
¢þ
>WENV180022045
FTFM01000319
[FTFM] metagenome; soil
81
6
-
Asn
GTT
[ENA]
¢þ
>WENV180022030
FTFM01000060
[FTFM] metagenome; soil
96
12
-
Leu
TAG
[ENA]
¢þ
>WENV180022055
FTFM01000477
[FTFM] metagenome; soil
278
353
+
Ala
CGC
[ENA]
¢þ
>WENV180022054
FTFM01000473
[FTFM] metagenome; soil
358
444
+
Leu
TAA
[ENA]
¢þ
>WENV180022058
FTFM01000531
[FTFM] metagenome; soil
433
359
-
Gly
CCC
[ENA]
¢þ
>WENV180022073
FTFM01000861
[FTFM] metagenome; soil
520
594
+
Thr
GGT
[ENA]
¢þ
>WENV180022051
FTFM01000421
[FTFM] metagenome; soil
528
604
+
His
GTG
[ENA]
¢þ
>WENV180022053
FTFM01000438
[FTFM] metagenome; soil
822
898
+
Asp
GTC
[ENA]
¢þ
>WENV180022040
FTFM01000224
[FTFM] metagenome; soil
891
967
+
Val
TAC
[ENA]
¢þ
>WENV180022032
FTFM01000077
[FTFM] metagenome; soil
1476
1552
+
Pro
TGG
[ENA]
¢þ
>WENV180022071
FTFM01000805
[FTFM] metagenome; soil
1898
1824
-
Gly
CCC
[ENA]
¢þ
>WENV180022033
FTFM01000077
[FTFM] metagenome; soil
1924
2000
+
Arg
TCT
[ENA]
¢þ
>WENV180022052
FTFM01000429
[FTFM] metagenome; soil
1976
1901
-
Thr
TGT
[ENA]
¢þ
>WENV180022047
FTFM01000333
[FTFM] metagenome; soil
2094
2019
-
Thr
TGT
[ENA]
¢þ
>WENV180022072
FTFM01000843
[FTFM] metagenome; soil
2347
2272
-
Phe
GAA
[ENA]
¢þ
>WENV180022061
FTFM01000582
[FTFM] metagenome; soil
2460
2384
-
Pro
CGG
[ENA]
¢þ
>WENV180022050
FTFM01000409
[FTFM] metagenome; soil
2574
2649
+
Lys
CTT
[ENA]
¢þ
>WENV180022037
FTFM01000153
[FTFM] metagenome; soil
2588
2503
-
Leu
CAA
[ENA]
¢þ
>WENV180022060
FTFM01000582
[FTFM] metagenome; soil
2603
2676
+
Gln
TTG
[ENA]
¢þ
>WENV180022042
FTFM01000293
[FTFM] metagenome; soil
2791
2702
-
Ser
TGA
[ENA]
¢þ
>WENV180022049
FTFM01000378
[FTFM] metagenome; soil
2842
2768
-
Lys
TTT
[ENA]
¢þ
>WENV180022041
FTFM01000261
[FTFM] metagenome; soil
3002
2928
-
Lys
TTT
[ENA]
¢þ
>WENV180022029
FTFM01000017
[FTFM] metagenome; soil
3148
3062
-
Leu
CAG
[ENA]
¢þ
>WENV180022044
FTFM01000316
[FTFM] metagenome; soil
3222
3146
-
Arg
TCT
[ENA]
¢þ
>WENV180022039
FTFM01000211
[FTFM] metagenome; soil
3276
3202
-
Thr
GGT
[ENA]
¢þ
>WENV180022068
FTFM01000771
[FTFM] metagenome; soil
3807
3723
-
Leu
GAG
[ENA]
¢þ
>WENV180022056
FTFM01000479
[FTFM] metagenome; soil
3815
3739
-
Met
CAT
[ENA]
¢þ
>WENV180022066
FTFM01000741
[FTFM] metagenome; soil
4016
3941
-
Ile2
CAT
[ENA]
¢þ
>WENV180022036
FTFM01000148
[FTFM] metagenome; soil
4070
4146
+
Met
CAT
[ENA]
¢þ
>WENV180022048
FTFM01000338
[FTFM] metagenome; soil
4100
4025
-
Ala
GGC
[ENA]
¢þ
>WENV180022063
FTFM01000611
[FTFM] metagenome; soil
4489
4413
-
Pro
GGG
[ENA]
¢þ
>WENV180022075
FTFM01000872
[FTFM] metagenome; soil
4497
4421
-
Asp
GTC
[ENA]
¢þ
>WENV180022043
FTFM01000298
[FTFM] metagenome; soil
4566
4640
+
Val
GAC
[ENA]
¢þ
>WENV180022035
FTFM01000146
[FTFM] metagenome; soil
4656
4580
-
fMet
CAT
[ENA]
¢þ
>WENV180022059
FTFM01000553
[FTFM] metagenome; soil
7086
7177
+
Ser
GCT
[ENA]
¢þ
>WENV180022074
FTFM01000871
[FTFM] metagenome; soil
7490
7414
-
Arg
CCG
[ENA]
¢þ
>WENV180022070
FTFM01000775
[FTFM] metagenome; soil
8649
8724
+
Ala
GGC
[ENA]
¢þ
>WENV180022067
FTFM01000756
[FTFM] metagenome; soil
9181
9105
-
Pro
GGG
[ENA]
¢þ
>WENV180022046
FTFM01000333
[FTFM] metagenome; soil
10479
10564
+
Tyr
GTA
[ENA]
¢þ
>WENV180022065
FTFM01000705
[FTFM] metagenome; soil
13122
13046
-
fMet
CAT
[ENA]
¢þ
>WENV180022038
FTFM01000169
[FTFM] metagenome; soil
13698
13624
-
Val
GAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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