This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTFP] metagenome; soil
HIT:
43 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022112
FTFP01000554
[FTFP] metagenome; soil
11
102
+
Ser
GCT
[ENA]
¢þ
>WENV180022098
FTFP01000068
[FTFP] metagenome; soil
19
94
+
Ala
CGC
[ENA]
¢þ
>WENV180022107
FTFP01000406
[FTFP] metagenome; soil
22
96
+
Val
GAC
[ENA]
¢þ
>WENV180022103
FTFP01000238
[FTFP] metagenome; soil
25
99
+
Thr
GGT
[ENA]
¢þ
>WENV180022123
FTFP01000857
[FTFP] metagenome; soil
90
-1
-
Ser
GCT
[ENA]
¢þ
>WENV180022122
FTFP01000847
[FTFP] metagenome; soil
98
22
-
Pro
GGG
[ENA]
¢þ
>WENV180022117
FTFP01000717
[FTFP] metagenome; soil
99
15
-
Leu
GAG
[ENA]
¢þ
>WENV180022120
FTFP01000765
[FTFP] metagenome; soil
99
15
-
Leu
GAG
[ENA]
¢þ
>WENV180022101
FTFP01000119
[FTFP] metagenome; soil
281
370
+
Ser
TGA
[ENA]
¢þ
>WENV180022116
FTFP01000661
[FTFP] metagenome; soil
294
205
-
Ser
GGA
[ENA]
¢þ
>WENV180022118
FTFP01000718
[FTFP] metagenome; soil
557
481
-
His
GTG
[ENA]
¢þ
>WENV180022135
FTFP01001457
[FTFP] metagenome; soil
558
482
-
Arg
CCT
[ENA]
¢þ
>WENV180022127
FTFP01000914
[FTFP] metagenome; soil
607
682
+
Thr
CGT
[ENA]
¢þ
>WENV180022096
FTFP01000006
[FTFP] metagenome; soil
607
683
+
His
GTG
[ENA]
¢þ
>WENV180022121
FTFP01000779
[FTFP] metagenome; soil
628
704
+
Arg
CCG
[ENA]
¢þ
>WENV180022113
FTFP01000604
[FTFP] metagenome; soil
802
728
-
Lys
TTT
[ENA]
¢þ
>WENV180022119
FTFP01000764
[FTFP] metagenome; soil
806
731
-
Thr
TGT
[ENA]
¢þ
>WENV180022124
FTFP01000879
[FTFP] metagenome; soil
872
947
+
Lys
CTT
[ENA]
¢þ
>WENV180022109
FTFP01000476
[FTFP] metagenome; soil
1066
1142
+
Arg
CCT
[ENA]
¢þ
>WENV180022129
FTFP01001117
[FTFP] metagenome; soil
1521
1610
+
Ser
GGA
[ENA]
¢þ
>WENV180022105
FTFP01000246
[FTFP] metagenome; soil
1868
1794
-
Lys
TTT
[ENA]
¢þ
>WENV180022115
FTFP01000633
[FTFP] metagenome; soil
1877
1801
-
Arg
TCT
[ENA]
¢þ
>WENV180022110
FTFP01000479
[FTFP] metagenome; soil
2166
2069
-
SeC
TCA
[ENA]
¢þ
>WENV180022132
FTFP01001180
[FTFP] metagenome; soil
2308
2384
+
Val
TAC
[ENA]
¢þ
>WENV180022111
FTFP01000537
[FTFP] metagenome; soil
2383
2294
-
Ser
TGA
[ENA]
¢þ
>WENV180022138
FTFP01001491
[FTFP] metagenome; soil
2426
2501
+
Thr
TGT
[ENA]
¢þ
>WENV180022126
FTFP01000897
[FTFP] metagenome; soil
2429
2503
+
Val
CAC
[ENA]
¢þ
>WENV180022128
FTFP01000965
[FTFP] metagenome; soil
2461
2545
+
Leu
TAG
[ENA]
¢þ
>WENV180022131
FTFP01001167
[FTFP] metagenome; soil
2742
2653
-
Ser
CGA
[ENA]
¢þ
>WENV180022137
FTFP01001470
[FTFP] metagenome; soil
2805
2732
-
Gln
TTG
[ENA]
¢þ
>WENV180022100
FTFP01000083
[FTFP] metagenome; soil
2853
2779
-
Glu
TTC
[ENA]
¢þ
>WENV180022134
FTFP01001430
[FTFP] metagenome; soil
2907
2983
+
Arg
TCT
[ENA]
¢þ
>WENV180022136
FTFP01001470
[FTFP] metagenome; soil
2960
3036
+
Pro
CGG
[ENA]
¢þ
>WENV180022099
FTFP01000077
[FTFP] metagenome; soil
3032
3108
+
Arg
CCT
[ENA]
¢þ
>WENV180022106
FTFP01000316
[FTFP] metagenome; soil
3046
3135
+
Ser
CGA
[ENA]
¢þ
>WENV180022104
FTFP01000244
[FTFP] metagenome; soil
3491
3566
+
Asn
GTT
[ENA]
¢þ
>WENV180022125
FTFP01000892
[FTFP] metagenome; soil
3597
3521
-
Pro
GGG
[ENA]
¢þ
>WENV180022102
FTFP01000199
[FTFP] metagenome; soil
4517
4441
-
Asp
GTC
[ENA]
¢þ
>WENV180022108
FTFP01000424
[FTFP] metagenome; soil
5374
5464
+
Ser
GCT
[ENA]
¢þ
>WENV180022133
FTFP01001366
[FTFP] metagenome; soil
5798
5723
-
Asn
GTT
[ENA]
¢þ
>WENV180022130
FTFP01001143
[FTFP] metagenome; soil
6436
6354
-
Leu
TAG
[ENA]
¢þ
>WENV180022097
FTFP01000057
[FTFP] metagenome; soil
7517
7441
-
fMet
CAT
[ENA]
¢þ
>WENV180022114
FTFP01000605
[FTFP] metagenome; soil
7796
7714
-
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK