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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTFR] metagenome; soil
HIT:
12 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022145
FTFR01000043
[FTFR] metagenome; soil
8
83
+
Ala
GGC
[ENA]
¢þ
>WENV180022150
FTFR01000384
[FTFR] metagenome; soil
621
695
+
Lys
TTT
[ENA]
¢þ
>WENV180022147
FTFR01000234
[FTFR] metagenome; soil
803
892
+
Ser
GGA
[ENA]
¢þ
>WENV180022151
FTFR01000453
[FTFR] metagenome; soil
1205
1120
-
Leu
TAA
[ENA]
¢þ
>WENV180022146
FTFR01000049
[FTFR] metagenome; soil
1232
1308
+
Arg
ACG
[ENA]
¢þ
>WENV180022152
FTFR01000494
[FTFR] metagenome; soil
1368
1292
-
Met
CAT
[ENA]
¢þ
>WENV180022149
FTFR01000375
[FTFR] metagenome; soil
1587
1662
+
Phe
GAA
[ENA]
¢þ
>WENV180022156
FTFR01000828
[FTFR] metagenome; soil
1592
1667
+
Ala
GGC
[ENA]
¢þ
>WENV180022148
FTFR01000322
[FTFR] metagenome; soil
1947
2022
+
Ala
CGC
[ENA]
¢þ
>WENV180022154
FTFR01000696
[FTFR] metagenome; soil
2136
2050
-
Leu
CAG
[ENA]
¢þ
>WENV180022153
FTFR01000534
[FTFR] metagenome; soil
3854
3928
+
Gly
GCC
[ENA]
¢þ
>WENV180022155
FTFR01000822
[FTFR] metagenome; soil
5302
5228
-
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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