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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTFS] metagenome; soil
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022174
FTFS01001303
[FTFS] metagenome; soil
3
77
+
Glu
CTC
[ENA]
¢þ
>WENV180022170
FTFS01001108
[FTFS] metagenome; soil
8
96
+
Ser
GCT
[ENA]
¢þ
>WENV180022157
FTFS01000263
[FTFS] metagenome; soil
117
44
-
Arg
CCG
[ENA]
¢þ
>WENV180022161
FTFS01000587
[FTFS] metagenome; soil
157
231
+
Gln
TTG
[ENA]
¢þ
>WENV180022168
FTFS01000947
[FTFS] metagenome; soil
271
344
+
Phe
GAA
[ENA]
¢þ
>WENV180022175
FTFS01001316
[FTFS] metagenome; soil
309
234
-
Phe
GAA
[ENA]
¢þ
>WENV180022165
FTFS01000798
[FTFS] metagenome; soil
388
462
+
Val
GAC
[ENA]
¢þ
>WENV180022158
FTFS01000281
[FTFS] metagenome; soil
547
624
+
Pro
GGG
[ENA]
¢þ
>WENV180022160
FTFS01000437
[FTFS] metagenome; soil
700
773
+
His
GTG
[ENA]
¢þ
>WENV180022172
FTFS01001144
[FTFS] metagenome; soil
950
1025
+
Thr
CGT
[ENA]
¢þ
>WENV180022166
FTFS01000812
[FTFS] metagenome; soil
1020
944
-
Pro
TGG
[ENA]
¢þ
>WENV180022171
FTFS01001112
[FTFS] metagenome; soil
1087
1161
+
Gly
CCC
[ENA]
¢þ
>WENV180022162
FTFS01000644
[FTFS] metagenome; soil
1401
1485
+
Leu
TAA
[ENA]
¢þ
>WENV180022164
FTFS01000796
[FTFS] metagenome; soil
1525
1454
-
Glu
TTC
[ENA]
¢þ
>WENV180022163
FTFS01000796
[FTFS] metagenome; soil
2074
2145
+
Lys
TTT
[ENA]
¢þ
>WENV180022159
FTFS01000422
[FTFS] metagenome; soil
2698
2623
-
Ala
CGC
[ENA]
¢þ
>WENV180022169
FTFS01000986
[FTFS] metagenome; soil
2927
3011
+
Leu
GAG
[ENA]
¢þ
>WENV180022167
FTFS01000942
[FTFS] metagenome; soil
3639
3727
+
Ser
GCT
[ENA]
¢þ
>WENV180022173
FTFS01001255
[FTFS] metagenome; soil
3661
3735
+
Lys
TTT
[ENA]
¢þ
>WENV180022176
FTFS01001356
[FTFS] metagenome; soil
4728
4802
+
Ala
CGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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