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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FTFT] metagenome; soil
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022182
FTFT01000799
[FTFT] metagenome; soil
19
95
+
Met
CAT
[ENA]
¢þ
>WENV180022184
FTFT01001345
[FTFT] metagenome; soil
58
144
+
Leu
TAA
[ENA]
¢þ
>WENV180022191
FTFT01002080
[FTFT] metagenome; soil
153
225
+
Val
CAC
[ENA]
¢þ
>WENV180022194
FTFT01002620
[FTFT] metagenome; soil
250
168
-
Leu
GAG
[ENA]
¢þ
>WENV180022192
FTFT01002099
[FTFT] metagenome; soil
272
347
+
Pro
GGG
[ENA]
¢þ
>WENV180022188
FTFT01001957
[FTFT] metagenome; soil
279
204
-
Thr
TGT
[ENA]
¢þ
>WENV180022186
FTFT01001531
[FTFT] metagenome; soil
295
377
+
Leu
TAG
[ENA]
¢þ
>WENV180022180
FTFT01000151
[FTFT] metagenome; soil
359
284
-
Arg
TCT
[ENA]
¢þ
>WENV180022187
FTFT01001818
[FTFT] metagenome; soil
372
457
+
Leu
TAA
[ENA]
¢þ
>WENV180022183
FTFT01000817
[FTFT] metagenome; soil
577
502
-
Asn
GTT
[ENA]
¢þ
>WENV180022189
FTFT01001964
[FTFT] metagenome; soil
620
546
-
Ile2
CAT
[ENA]
¢þ
>WENV180022181
FTFT01000625
[FTFT] metagenome; soil
916
988
+
Gly
GCC
[ENA]
¢þ
>WENV180022179
FTFT01000109
[FTFT] metagenome; soil
1187
1113
-
Glu
TTC
[ENA]
¢þ
>WENV180022195
FTFT01002645
[FTFT] metagenome; soil
1196
1272
+
Arg
TCG
[ENA]
¢þ
>WENV180022178
FTFT01000054
[FTFT] metagenome; soil
1232
1306
+
Gly
CCC
[ENA]
¢þ
>WENV180022177
FTFT01000015
[FTFT] metagenome; soil
1481
1555
+
Val
GAC
[ENA]
¢þ
>WENV180022185
FTFT01001475
[FTFT] metagenome; soil
2165
2251
+
Ser
CGA
[ENA]
¢þ
>WENV180022193
FTFT01002291
[FTFT] metagenome; soil
2261
2334
+
Ala
GGC
[ENA]
¢þ
>WENV180022190
FTFT01002069
[FTFT] metagenome; soil
2507
2433
-
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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