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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTFW] metagenome; soil
HIT:
13 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022268
FTFW01000095
[FTFW] metagenome; soil
7
83
+
Asp
GTC
[ENA]
¢þ
>WENV180022279
FTFW01000563
[FTFW] metagenome; soil
24
98
+
Glu
CTC
[ENA]
¢þ
>WENV180022276
FTFW01000476
[FTFW] metagenome; soil
368
444
+
Ile
GAT
[ENA]
¢þ
>WENV180022277
FTFW01000476
[FTFW] metagenome; soil
482
557
+
Ala
TGC
[ENA]
¢þ
>WENV180022269
FTFW01000095
[FTFW] metagenome; soil
1016
940
-
Val
TAC
[ENA]
¢þ
>WENV180022274
FTFW01000284
[FTFW] metagenome; soil
1183
1110
-
Ile2
CAT
[ENA]
¢þ
>WENV180022271
FTFW01000191
[FTFW] metagenome; soil
1390
1465
+
Ala
GGC
[ENA]
¢þ
>WENV180022272
FTFW01000251
[FTFW] metagenome; soil
1408
1333
-
Gly
GCC
[ENA]
¢þ
>WENV180022273
FTFW01000284
[FTFW] metagenome; soil
1410
1337
-
Asn
GTT
[ENA]
¢þ
>WENV180022270
FTFW01000135
[FTFW] metagenome; soil
1599
1684
+
Leu
CAA
[ENA]
¢þ
>WENV180022280
FTFW01000621
[FTFW] metagenome; soil
1757
1843
+
Leu
GAG
[ENA]
¢þ
>WENV180022275
FTFW01000345
[FTFW] metagenome; soil
1801
1729
-
Ala
CGC
[ENA]
¢þ
>WENV180022278
FTFW01000499
[FTFW] metagenome; soil
9241
9315
+
Gly
TCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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