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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA gene List
[FTFX] metagenome; soil
HIT:
11 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022286
FTFX01000712
[FTFX] metagenome; soil
119
194
+
Glu
CTC
[ENA]
¢þ
>WENV180022283
FTFX01000324
[FTFX] metagenome; soil
232
157
-
Glu
CTC
[ENA]
¢þ
>WENV180022284
FTFX01000410
[FTFX] metagenome; soil
308
392
+
Leu
TAG
[ENA]
¢þ
>WENV180022285
FTFX01000572
[FTFX] metagenome; soil
393
319
-
Gln
TTG
[ENA]
¢þ
>WENV180022282
FTFX01000312
[FTFX] metagenome; soil
453
378
-
Thr
CGT
[ENA]
¢þ
>WENV180022281
FTFX01000271
[FTFX] metagenome; soil
1188
1096
-
Ser
GCT
[ENA]
¢þ
>WENV180022287
FTFX01000719
[FTFX] metagenome; soil
1243
1329
+
Leu
TAA
[ENA]
¢þ
>WENV180022289
FTFX01000758
[FTFX] metagenome; soil
1934
2026
+
Ser
CGA
[ENA]
¢þ
>WENV180022290
FTFX01000767
[FTFX] metagenome; soil
2229
2305
+
Arg
CCG
[ENA]
¢þ
>WENV180022288
FTFX01000729
[FTFX] metagenome; soil
3112
3028
-
Leu
CAG
[ENA]
¢þ
>WENV180022291
FTFX01000785
[FTFX] metagenome; soil
4815
4740
-
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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