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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTGD] metagenome; soil
HIT:
10 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022394
FTGD01000768
[FTGD] metagenome; soil
9
84
+
Lys
TTT
[ENA]
¢þ
>WENV180022388
FTGD01000274
[FTGD] metagenome; soil
17
88
+
Lys
TTT
[ENA]
¢þ
>WENV180022391
FTGD01000574
[FTGD] metagenome; soil
91
21
-
Gly
TCC
[ENA]
¢þ
>WENV180022390
FTGD01000514
[FTGD] metagenome; soil
489
564
+
Asp
GTC
[ENA]
¢þ
>WENV180022396
FTGD01001288
[FTGD] metagenome; soil
563
488
-
Lys
TTT
[ENA]
¢þ
>WENV180022387
FTGD01000185
[FTGD] metagenome; soil
912
1003
+
Ser
GGA
[ENA]
¢þ
>WENV180022392
FTGD01000677
[FTGD] metagenome; soil
1551
1476
-
Phe
GAA
[ENA]
¢þ
>WENV180022389
FTGD01000401
[FTGD] metagenome; soil
1681
1752
+
Gln
TTG
[ENA]
¢þ
>WENV180022393
FTGD01000701
[FTGD] metagenome; soil
2692
2618
-
Gly
GCC
[ENA]
¢þ
>WENV180022395
FTGD01000878
[FTGD] metagenome; soil
5739
5664
-
Glu
CTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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