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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTGF] metagenome; soil
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022435
FTGF01000466
[FTGF] metagenome; soil
3
92
+
Ser
GGA
[ENA]
¢þ
>WENV180022450
FTGF01001907
[FTGF] metagenome; soil
10
94
+
Leu
GAG
[ENA]
¢þ
>WENV180022440
FTGF01001063
[FTGF] metagenome; soil
21
95
+
Lys
TTT
[ENA]
¢þ
>WENV180022444
FTGF01001493
[FTGF] metagenome; soil
385
309
-
Arg
CCT
[ENA]
¢þ
>WENV180022449
FTGF01001888
[FTGF] metagenome; soil
447
372
-
Lys
CTT
[ENA]
¢þ
>WENV180022441
FTGF01001132
[FTGF] metagenome; soil
522
598
+
Pro
TGG
[ENA]
¢þ
>WENV180022445
FTGF01001582
[FTGF] metagenome; soil
529
605
+
Arg
CCT
[ENA]
¢þ
>WENV180022431
FTGF01000131
[FTGF] metagenome; soil
633
549
-
Leu
TAA
[ENA]
¢þ
>WENV180022433
FTGF01000331
[FTGF] metagenome; soil
657
746
+
Ser
TGA
[ENA]
¢þ
>WENV180022439
FTGF01000816
[FTGF] metagenome; soil
686
603
-
Leu
CAA
[ENA]
¢þ
>WENV180022436
FTGF01000553
[FTGF] metagenome; soil
811
900
+
Ser
TGA
[ENA]
¢þ
>WENV180022438
FTGF01000784
[FTGF] metagenome; soil
816
741
-
Ala
CGC
[ENA]
¢þ
>WENV180022442
FTGF01001132
[FTGF] metagenome; soil
1007
1083
+
Arg
TCT
[ENA]
¢þ
>WENV180022432
FTGF01000263
[FTGF] metagenome; soil
1042
1115
+
Cys
GCA
[ENA]
¢þ
>WENV180022437
FTGF01000723
[FTGF] metagenome; soil
1242
1167
-
Trp
CCA
[ENA]
¢þ
>WENV180022443
FTGF01001296
[FTGF] metagenome; soil
1364
1290
-
Asn
GTT
[ENA]
¢þ
>WENV180022434
FTGF01000402
[FTGF] metagenome; soil
1504
1430
-
Gly
CCC
[ENA]
¢þ
>WENV180022447
FTGF01001656
[FTGF] metagenome; soil
3307
3234
-
Gln
TTG
[ENA]
¢þ
>WENV180022446
FTGF01001656
[FTGF] metagenome; soil
3444
3520
+
Pro
CGG
[ENA]
¢þ
>WENV180022448
FTGF01001874
[FTGF] metagenome; soil
36187
36111
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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