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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTGG] metagenome; soil
HIT:
33 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022458
FTGG01000416
[FTGG] metagenome; soil
21
91
+
Gly
TCC
[ENA]
¢þ
>WENV180022479
FTGG01000900
[FTGG] metagenome; soil
26
98
+
Thr
GGT
[ENA]
¢þ
>WENV180022455
FTGG01000261
[FTGG] metagenome; soil
76
4
-
Lys
CTT
[ENA]
¢þ
>WENV180022471
FTGG01000603
[FTGG] metagenome; soil
96
23
-
fMet
CAT
[ENA]
¢þ
>WENV180022459
FTGG01000416
[FTGG] metagenome; soil
103
176
+
Pro
GGG
[ENA]
¢þ
>WENV180022464
FTGG01000453
[FTGG] metagenome; soil
109
182
+
Val
TAC
[ENA]
¢þ
>WENV180022451
FTGG01000002
[FTGG] metagenome; soil
426
501
+
Pro
CGG
[ENA]
¢þ
>WENV180022474
FTGG01000664
[FTGG] metagenome; soil
667
596
-
Arg
CCT
[ENA]
¢þ
>WENV180022481
FTGG01001054
[FTGG] metagenome; soil
973
1063
+
Ser
TGA
[ENA]
¢þ
>WENV180022475
FTGG01000742
[FTGG] metagenome; soil
1073
1164
+
Ser
GCT
[ENA]
¢þ
>WENV180022478
FTGG01000880
[FTGG] metagenome; soil
1086
1159
+
Gly
GCC
[ENA]
¢þ
>WENV180022456
FTGG01000327
[FTGG] metagenome; soil
1353
1426
+
Pro
TGG
[ENA]
¢þ
>WENV180022468
FTGG01000590
[FTGG] metagenome; soil
1389
1462
+
Arg
TCT
[ENA]
¢þ
>WENV180022453
FTGG01000180
[FTGG] metagenome; soil
1416
1490
+
Val
TAC
[ENA]
¢þ
>WENV180022477
FTGG01000802
[FTGG] metagenome; soil
1463
1554
+
Ser
GGA
[ENA]
¢þ
>WENV180022454
FTGG01000180
[FTGG] metagenome; soil
1504
1580
+
Asp
GTC
[ENA]
¢þ
>WENV180022452
FTGG01000036
[FTGG] metagenome; soil
1595
1523
-
Lys
CTT
[ENA]
¢þ
>WENV180022466
FTGG01000499
[FTGG] metagenome; soil
2188
2259
+
Gln
CTG
[ENA]
¢þ
>WENV180022469
FTGG01000592
[FTGG] metagenome; soil
2377
2293
-
Ser
TGA
[ENA]
¢þ
>WENV180022462
FTGG01000445
[FTGG] metagenome; soil
2646
2574
-
Thr
TGT
[ENA]
¢þ
>WENV180022476
FTGG01000752
[FTGG] metagenome; soil
2671
2744
+
Ile
GAT
[ENA]
¢þ
>WENV180022463
FTGG01000450
[FTGG] metagenome; soil
2874
2945
+
Val
CAC
[ENA]
¢þ
>WENV180022480
FTGG01000989
[FTGG] metagenome; soil
2913
2986
+
Arg
TCT
[ENA]
¢þ
>WENV180022461
FTGG01000432
[FTGG] metagenome; soil
3037
2962
-
Asp
GTC
[ENA]
¢þ
>WENV180022460
FTGG01000424
[FTGG] metagenome; soil
3635
3552
-
Leu
CAG
[ENA]
¢þ
>WENV180022457
FTGG01000398
[FTGG] metagenome; soil
3829
3756
-
Ile
GAT
[ENA]
¢þ
>WENV180022473
FTGG01000657
[FTGG] metagenome; soil
4083
4011
-
Phe
GAA
[ENA]
¢þ
>WENV180022470
FTGG01000598
[FTGG] metagenome; soil
4345
4264
-
Tyr
GTA
[ENA]
¢þ
>WENV180022467
FTGG01000569
[FTGG] metagenome; soil
4437
4364
-
Ile2
CAT
[ENA]
¢þ
>WENV180022483
FTGG01001067
[FTGG] metagenome; soil
5022
4939
-
Leu
TAG
[ENA]
¢þ
>WENV180022482
FTGG01001067
[FTGG] metagenome; soil
5075
5158
+
Leu
CAA
[ENA]
¢þ
>WENV180022472
FTGG01000652
[FTGG] metagenome; soil
6870
6784
-
Leu
GAG
[ENA]
¢þ
>WENV180022465
FTGG01000469
[FTGG] metagenome; soil
7359
7286
-
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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