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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTGH] metagenome; soil
HIT:
11 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022484
FTGH01000011
[FTGH] metagenome; soil
3
95
+
Ser
GCT
[ENA]
¢þ
>WENV180022489
FTGH01000166
[FTGH] metagenome; soil
22
98
+
Met
CAT
[ENA]
¢þ
>WENV180022492
FTGH01000320
[FTGH] metagenome; soil
117
29
-
Leu
TAA
[ENA]
¢þ
>WENV180022485
FTGH01000048
[FTGH] metagenome; soil
299
228
-
Gly
CCC
[ENA]
¢þ
>WENV180022490
FTGH01000221
[FTGH] metagenome; soil
446
522
+
Asp
GTC
[ENA]
¢þ
>WENV180022488
FTGH01000138
[FTGH] metagenome; soil
497
570
+
Ile
GAT
[ENA]
¢þ
>WENV180022487
FTGH01000079
[FTGH] metagenome; soil
1280
1354
+
Pro
GGG
[ENA]
¢þ
>WENV180022486
FTGH01000078
[FTGH] metagenome; soil
1642
1567
-
Ala
GGC
[ENA]
¢þ
>WENV180022494
FTGH01000379
[FTGH] metagenome; soil
2161
2235
+
Ser
GCT
[ENA]
¢þ
>WENV180022493
FTGH01000373
[FTGH] metagenome; soil
2437
2360
-
Arg
CCG
[ENA]
¢þ
>WENV180022491
FTGH01000246
[FTGH] metagenome; soil
2560
2634
+
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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