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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTGI] metagenome; soil
HIT:
54 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022495
FTGI01000086
[FTGI] metagenome; soil
2
77
+
Thr
GGT
[ENA]
¢þ
>WENV180022534
FTGI01002267
[FTGI] metagenome; soil
7
96
+
Ser
GGA
[ENA]
¢þ
>WENV180022497
FTGI01000210
[FTGI] metagenome; soil
22
96
+
Gly
GCC
[ENA]
¢þ
>WENV180022498
FTGI01000279
[FTGI] metagenome; soil
41
118
+
Arg
CCG
[ENA]
¢þ
>WENV180022520
FTGI01001801
[FTGI] metagenome; soil
68
144
+
Arg
CCT
[ENA]
¢þ
>WENV180022510
FTGI01000580
[FTGI] metagenome; soil
73
-1
-
Val
TAC
[ENA]
¢þ
>WENV180022519
FTGI01001745
[FTGI] metagenome; soil
97
21
-
Pro
CGG
[ENA]
¢þ
>WENV180022545
FTGI01003133
[FTGI] metagenome; soil
104
14
-
Ser
CGA
[ENA]
¢þ
>WENV180022535
FTGI01002273
[FTGI] metagenome; soil
120
45
-
Arg
CCT
[ENA]
¢þ
>WENV180022543
FTGI01002955
[FTGI] metagenome; soil
122
48
-
His
GTG
[ENA]
¢þ
>WENV180022499
FTGI01000279
[FTGI] metagenome; soil
127
203
+
Arg
TCT
[ENA]
¢þ
>WENV180022526
FTGI01001931
[FTGI] metagenome; soil
131
207
+
Pro
CGG
[ENA]
¢þ
>WENV180022500
FTGI01000279
[FTGI] metagenome; soil
210
283
+
Gln
CTG
[ENA]
¢þ
>WENV180022540
FTGI01002665
[FTGI] metagenome; soil
228
304
+
Pro
CGG
[ENA]
¢þ
>WENV180022546
FTGI01003346
[FTGI] metagenome; soil
249
175
-
Asn
GTT
[ENA]
¢þ
>WENV180022512
FTGI01001040
[FTGI] metagenome; soil
289
365
+
Ile
GAT
[ENA]
¢þ
>WENV180022501
FTGI01000279
[FTGI] metagenome; soil
291
365
+
Arg
CCT
[ENA]
¢þ
>WENV180022502
FTGI01000279
[FTGI] metagenome; soil
381
456
+
Asn
GTT
[ENA]
¢þ
>WENV180022516
FTGI01001479
[FTGI] metagenome; soil
384
461
+
Pro
GGG
[ENA]
¢þ
>WENV180022536
FTGI01002285
[FTGI] metagenome; soil
417
343
-
Lys
TTT
[ENA]
¢þ
>WENV180022513
FTGI01001040
[FTGI] metagenome; soil
443
518
+
Ala
TGC
[ENA]
¢þ
>WENV180022508
FTGI01000555
[FTGI] metagenome; soil
597
521
-
Arg
ACG
[ENA]
¢þ
>WENV180022496
FTGI01000170
[FTGI] metagenome; soil
634
560
-
Pro
TGG
[ENA]
¢þ
>WENV180022532
FTGI01002131
[FTGI] metagenome; soil
635
547
-
Leu
CAA
[ENA]
¢þ
>WENV180022503
FTGI01000279
[FTGI] metagenome; soil
679
757
+
Glu
TTC
[ENA]
¢þ
>WENV180022544
FTGI01003069
[FTGI] metagenome; soil
685
611
-
Val
GAC
[ENA]
¢þ
>WENV180022525
FTGI01001922
[FTGI] metagenome; soil
697
622
-
Trp
CCA
[ENA]
¢þ
>WENV180022507
FTGI01000415
[FTGI] metagenome; soil
894
820
-
Gly
CCC
[ENA]
¢þ
>WENV180022542
FTGI01002907
[FTGI] metagenome; soil
934
1007
+
Ile2
CAT
[ENA]
¢þ
>WENV180022523
FTGI01001823
[FTGI] metagenome; soil
1071
998
-
Gly
CCC
[ENA]
¢þ
>WENV180022514
FTGI01001311
[FTGI] metagenome; soil
1094
1020
-
Val
CAC
[ENA]
¢þ
>WENV180022538
FTGI01002550
[FTGI] metagenome; soil
1151
1226
+
Arg
CCT
[ENA]
¢þ
>WENV180022509
FTGI01000580
[FTGI] metagenome; soil
1278
1351
+
Val
TAC
[ENA]
¢þ
>WENV180022515
FTGI01001465
[FTGI] metagenome; soil
1304
1380
+
His
GTG
[ENA]
¢þ
>WENV180022504
FTGI01000279
[FTGI] metagenome; soil
1312
1387
+
Phe
GAA
[ENA]
¢þ
>WENV180022505
FTGI01000279
[FTGI] metagenome; soil
1397
1471
+
Lys
CTT
[ENA]
¢þ
>WENV180022517
FTGI01001540
[FTGI] metagenome; soil
1455
1531
+
Arg
CCG
[ENA]
¢þ
>WENV180022506
FTGI01000279
[FTGI] metagenome; soil
1478
1553
+
Lys
TTT
[ENA]
¢þ
>WENV180022518
FTGI01001540
[FTGI] metagenome; soil
1713
1788
+
Lys
CTT
[ENA]
¢þ
>WENV180022511
FTGI01000801
[FTGI] metagenome; soil
1985
2061
+
Met
CAT
[ENA]
¢þ
>WENV180022547
FTGI01003405
[FTGI] metagenome; soil
2016
1941
-
Ala
CGC
[ENA]
¢þ
>WENV180022527
FTGI01001979
[FTGI] metagenome; soil
2057
2131
+
Glu
CTC
[ENA]
¢þ
>WENV180022537
FTGI01002430
[FTGI] metagenome; soil
2262
2347
+
Leu
CAG
[ENA]
¢þ
>WENV180022529
FTGI01002072
[FTGI] metagenome; soil
2936
2861
-
Ala
GGC
[ENA]
¢þ
>WENV180022531
FTGI01002130
[FTGI] metagenome; soil
3043
2969
-
Gln
TTG
[ENA]
¢þ
>WENV180022541
FTGI01002801
[FTGI] metagenome; soil
3151
3077
-
Glu
TTC
[ENA]
¢þ
>WENV180022533
FTGI01002248
[FTGI] metagenome; soil
3553
3628
+
Val
GAC
[ENA]
¢þ
>WENV180022524
FTGI01001916
[FTGI] metagenome; soil
4656
4740
+
Leu
TAG
[ENA]
¢þ
>WENV180022528
FTGI01001994
[FTGI] metagenome; soil
4807
4732
-
Thr
CGT
[ENA]
¢þ
>WENV180022521
FTGI01001802
[FTGI] metagenome; soil
4872
4948
+
Arg
ACG
[ENA]
¢þ
>WENV180022530
FTGI01002085
[FTGI] metagenome; soil
5550
5465
-
Leu
TAG
[ENA]
¢þ
>WENV180022539
FTGI01002565
[FTGI] metagenome; soil
5984
5908
-
fMet
CAT
[ENA]
¢þ
>WENV180022522
FTGI01001822
[FTGI] metagenome; soil
6570
6485
-
Leu
GAG
[ENA]
¢þ
>WENV180022548
FTGI01003418
[FTGI] metagenome; soil
9348
9421
+
Gln
CTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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