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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTGK] metagenome; soil
HIT:
55 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022550
FTGK01000001
[FTGK] metagenome; soil
6
95
+
Ser
CGA
[ENA]
¢þ
>WENV180022587
FTGK01000943
[FTGK] metagenome; soil
9
98
+
Ser
GCT
[ENA]
¢þ
>WENV180022586
FTGK01000936
[FTGK] metagenome; soil
10
99
+
Ser
CGA
[ENA]
¢þ
>WENV180022569
FTGK01000705
[FTGK] metagenome; soil
13
98
+
Leu
CAA
[ENA]
¢þ
>WENV180022604
FTGK01001344
[FTGK] metagenome; soil
21
96
+
Thr
CGT
[ENA]
¢þ
>WENV180022558
FTGK01000477
[FTGK] metagenome; soil
22
97
+
Lys
CTT
[ENA]
¢þ
>WENV180022589
FTGK01000947
[FTGK] metagenome; soil
23
99
+
Pro
GGG
[ENA]
¢þ
>WENV180022566
FTGK01000656
[FTGK] metagenome; soil
23
99
+
Arg
CCT
[ENA]
¢þ
>WENV180022563
FTGK01000608
[FTGK] metagenome; soil
24
99
+
Phe
GAA
[ENA]
¢þ
>WENV180022591
FTGK01000958
[FTGK] metagenome; soil
85
-1
-
Leu
CAG
[ENA]
¢þ
>WENV180022562
FTGK01000600
[FTGK] metagenome; soil
95
11
-
Leu
TAG
[ENA]
¢þ
>WENV180022592
FTGK01000961
[FTGK] metagenome; soil
97
2
-
SeC
TCA
[ENA]
¢þ
>WENV180022560
FTGK01000532
[FTGK] metagenome; soil
116
30
-
Leu
TAA
[ENA]
¢þ
>WENV180022551
FTGK01000224
[FTGK] metagenome; soil
184
259
+
Thr
CGT
[ENA]
¢þ
>WENV180022582
FTGK01000802
[FTGK] metagenome; soil
216
289
+
Gln
TTG
[ENA]
¢þ
>WENV180022600
FTGK01001274
[FTGK] metagenome; soil
247
338
+
Ser
GCT
[ENA]
¢þ
>WENV180022552
FTGK01000270
[FTGK] metagenome; soil
551
646
+
SeC
TCA
[ENA]
¢þ
>WENV180022554
FTGK01000353
[FTGK] metagenome; soil
605
532
-
Gln
TTG
[ENA]
¢þ
>WENV180022593
FTGK01000983
[FTGK] metagenome; soil
642
568
-
Lys
TTT
[ENA]
¢þ
>WENV180022553
FTGK01000353
[FTGK] metagenome; soil
743
819
+
Pro
CGG
[ENA]
¢þ
>WENV180022601
FTGK01001295
[FTGK] metagenome; soil
788
712
-
Arg
CCG
[ENA]
¢þ
>WENV180022603
FTGK01001312
[FTGK] metagenome; soil
789
700
-
Ser
TGA
[ENA]
¢þ
>WENV180022585
FTGK01000923
[FTGK] metagenome; soil
895
811
-
Leu
TAA
[ENA]
¢þ
>WENV180022598
FTGK01001190
[FTGK] metagenome; soil
1230
1155
-
Thr
CGT
[ENA]
¢þ
>WENV180022584
FTGK01000913
[FTGK] metagenome; soil
1321
1397
+
Arg
CCT
[ENA]
¢þ
>WENV180022557
FTGK01000458
[FTGK] metagenome; soil
1438
1365
-
Gln
TTG
[ENA]
¢þ
>WENV180022556
FTGK01000458
[FTGK] metagenome; soil
1590
1666
+
Pro
CGG
[ENA]
¢þ
>WENV180022580
FTGK01000792
[FTGK] metagenome; soil
1736
1820
+
Leu
TAG
[ENA]
¢þ
>WENV180022602
FTGK01001312
[FTGK] metagenome; soil
2074
1985
-
Ser
TGA
[ENA]
¢þ
>WENV180022565
FTGK01000654
[FTGK] metagenome; soil
2353
2278
-
Thr
TGT
[ENA]
¢þ
>WENV180022571
FTGK01000706
[FTGK] metagenome; soil
2589
2665
+
His
GTG
[ENA]
¢þ
>WENV180022573
FTGK01000741
[FTGK] metagenome; soil
2805
2890
+
Tyr
GTA
[ENA]
¢þ
>WENV180022574
FTGK01000741
[FTGK] metagenome; soil
2932
3005
+
Gly
TCC
[ENA]
¢þ
>WENV180022568
FTGK01000698
[FTGK] metagenome; soil
3101
3028
-
Cys
GCA
[ENA]
¢þ
>WENV180022597
FTGK01001075
[FTGK] metagenome; soil
3740
3826
+
Leu
TAA
[ENA]
¢þ
>WENV180022579
FTGK01000782
[FTGK] metagenome; soil
3849
3923
+
Glu
TTC
[ENA]
¢þ
>WENV180022577
FTGK01000753
[FTGK] metagenome; soil
4533
4457
-
Arg
TCT
[ENA]
¢þ
>WENV180022595
FTGK01001050
[FTGK] metagenome; soil
5118
5192
+
Val
GAC
[ENA]
¢þ
>WENV180022588
FTGK01000945
[FTGK] metagenome; soil
5448
5374
-
Thr
TGT
[ENA]
¢þ
>WENV180022559
FTGK01000508
[FTGK] metagenome; soil
5535
5609
+
Thr
GGT
[ENA]
¢þ
>WENV180022555
FTGK01000418
[FTGK] metagenome; soil
5562
5486
-
Ile2
CAT
[ENA]
¢þ
>WENV180022596
FTGK01001061
[FTGK] metagenome; soil
5620
5695
+
Asn
GTT
[ENA]
¢þ
>WENV180022576
FTGK01000753
[FTGK] metagenome; soil
5637
5561
-
Pro
TGG
[ENA]
¢þ
>WENV180022575
FTGK01000753
[FTGK] metagenome; soil
8166
8092
-
Glu
TTC
[ENA]
¢þ
>WENV180022578
FTGK01000772
[FTGK] metagenome; soil
8604
8677
+
Val
GAC
[ENA]
¢þ
>WENV180022570
FTGK01000705
[FTGK] metagenome; soil
9082
9007
-
Thr
CGT
[ENA]
¢þ
>WENV180022594
FTGK01001045
[FTGK] metagenome; soil
10274
10349
+
Ile2
CAT
[ENA]
¢þ
>WENV180022599
FTGK01001214
[FTGK] metagenome; soil
11304
11231
-
Cys
GCA
[ENA]
¢þ
>WENV180022583
FTGK01000842
[FTGK] metagenome; soil
13629
13703
+
Gly
GCC
[ENA]
¢þ
>WENV180022561
FTGK01000578
[FTGK] metagenome; soil
13689
13614
-
Ile2
CAT
[ENA]
¢þ
>WENV180022572
FTGK01000726
[FTGK] metagenome; soil
18418
18342
-
Pro
CGG
[ENA]
¢þ
>WENV180022564
FTGK01000637
[FTGK] metagenome; soil
19397
19323
-
Val
CAC
[ENA]
¢þ
>WENV180022590
FTGK01000958
[FTGK] metagenome; soil
22236
22321
+
Leu
CAG
[ENA]
¢þ
>WENV180022567
FTGK01000677
[FTGK] metagenome; soil
24113
24038
-
Ala
CGC
[ENA]
¢þ
>WENV180022581
FTGK01000796
[FTGK] metagenome; soil
25222
25133
-
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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