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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTGL] metagenome; soil
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022615
FTGL01000260
[FTGL] metagenome; soil
6
95
+
Ser
CGA
[ENA]
¢þ
>WENV180022639
FTGL01002017
[FTGL] metagenome; soil
9
83
+
Gly
GCC
[ENA]
¢þ
>WENV180022605
FTGL01000009
[FTGL] metagenome; soil
11
85
+
Asn
GTT
[ENA]
¢þ
>WENV180022610
FTGL01000202
[FTGL] metagenome; soil
13
87
+
Thr
GGT
[ENA]
¢þ
>WENV180022606
FTGL01000045
[FTGL] metagenome; soil
13
98
+
Ser
TGA
[ENA]
¢þ
>WENV180022619
FTGL01000722
[FTGL] metagenome; soil
24
98
+
Val
GAC
[ENA]
¢þ
>WENV180022632
FTGL01001678
[FTGL] metagenome; soil
24
98
+
Glu
TTC
[ENA]
¢þ
>WENV180022609
FTGL01000193
[FTGL] metagenome; soil
106
179
+
Gln
TTG
[ENA]
¢þ
>WENV180022630
FTGL01001478
[FTGL] metagenome; soil
192
267
+
Thr
CGT
[ENA]
¢þ
>WENV180022623
FTGL01001163
[FTGL] metagenome; soil
360
435
+
Thr
TGT
[ENA]
¢þ
>WENV180022622
FTGL01001126
[FTGL] metagenome; soil
384
459
+
Phe
GAA
[ENA]
¢þ
>WENV180022614
FTGL01000237
[FTGL] metagenome; soil
562
486
-
Arg
CCT
[ENA]
¢þ
>WENV180022624
FTGL01001180
[FTGL] metagenome; soil
579
504
-
Trp
CCA
[ENA]
¢þ
>WENV180022625
FTGL01001191
[FTGL] metagenome; soil
719
792
+
Cys
GCA
[ENA]
¢þ
>WENV180022612
FTGL01000214
[FTGL] metagenome; soil
877
802
-
Asn
GTT
[ENA]
¢þ
>WENV180022608
FTGL01000155
[FTGL] metagenome; soil
1048
974
-
Thr
GGT
[ENA]
¢þ
>WENV180022616
FTGL01000692
[FTGL] metagenome; soil
1170
1245
+
Lys
CTT
[ENA]
¢þ
>WENV180022631
FTGL01001658
[FTGL] metagenome; soil
1208
1119
-
Ser
GGA
[ENA]
¢þ
>WENV180022613
FTGL01000216
[FTGL] metagenome; soil
1265
1339
+
Gly
GCC
[ENA]
¢þ
>WENV180022620
FTGL01000983
[FTGL] metagenome; soil
1578
1663
+
Tyr
GTA
[ENA]
¢þ
>WENV180022607
FTGL01000098
[FTGL] metagenome; soil
1584
1508
-
Asp
GTC
[ENA]
¢þ
>WENV180022627
FTGL01001193
[FTGL] metagenome; soil
1603
1530
-
Gly
TCC
[ENA]
¢þ
>WENV180022626
FTGL01001193
[FTGL] metagenome; soil
1707
1623
-
Tyr
GTA
[ENA]
¢þ
>WENV180022621
FTGL01000983
[FTGL] metagenome; soil
1722
1795
+
Gly
TCC
[ENA]
¢þ
>WENV180022611
FTGL01000202
[FTGL] metagenome; soil
1758
1684
-
Thr
GGT
[ENA]
¢þ
>WENV180022629
FTGL01001330
[FTGL] metagenome; soil
1786
1711
-
Ala
CGC
[ENA]
¢þ
>WENV180022628
FTGL01001228
[FTGL] metagenome; soil
1886
1962
+
Arg
CCT
[ENA]
¢þ
>WENV180022635
FTGL01001775
[FTGL] metagenome; soil
2148
2064
-
Leu
CAG
[ENA]
¢þ
>WENV180022618
FTGL01000716
[FTGL] metagenome; soil
2415
2339
-
Met
CAT
[ENA]
¢þ
>WENV180022617
FTGL01000705
[FTGL] metagenome; soil
2862
2788
-
Val
CAC
[ENA]
¢þ
>WENV180022638
FTGL01001992
[FTGL] metagenome; soil
3067
2993
-
Thr
GGT
[ENA]
¢þ
>WENV180022636
FTGL01001850
[FTGL] metagenome; soil
4150
4062
-
Leu
TAA
[ENA]
¢þ
>WENV180022633
FTGL01001731
[FTGL] metagenome; soil
4568
4493
-
Ala
GGC
[ENA]
¢þ
>WENV180022640
FTGL01002019
[FTGL] metagenome; soil
8607
8682
+
Thr
CGT
[ENA]
¢þ
>WENV180022637
FTGL01001924
[FTGL] metagenome; soil
9181
9107
-
Met
CAT
[ENA]
¢þ
>WENV180022634
FTGL01001737
[FTGL] metagenome; soil
9979
10054
+
Ala
CGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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