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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA gene List
[FTGM] metagenome; soil
HIT:
7 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022647
FTGM01000557
[FTGM] metagenome; soil
16
92
+
Asp
GTC
[ENA]
¢þ
>WENV180022645
FTGM01000400
[FTGM] metagenome; soil
346
419
+
Trp
CCA
[ENA]
¢þ
>WENV180022644
FTGM01000365
[FTGM] metagenome; soil
418
342
-
Ile2
CAT
[ENA]
¢þ
>WENV180022642
FTGM01000031
[FTGM] metagenome; soil
487
411
-
Pro
CGG
[ENA]
¢þ
>WENV180022646
FTGM01000532
[FTGM] metagenome; soil
511
438
-
Gln
CTG
[ENA]
¢þ
>WENV180022643
FTGM01000049
[FTGM] metagenome; soil
1211
1135
-
Arg
ACG
[ENA]
¢þ
>WENV180022641
FTGM01000001
[FTGM] metagenome; soil
2171
2244
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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