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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTGN] metagenome; soil
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022654
FTGN01000748
[FTGN] metagenome; soil
10
99
+
Ser
GGA
[ENA]
¢þ
>WENV180022675
FTGN01001499
[FTGN] metagenome; soil
13
99
+
Leu
CAG
[ENA]
¢þ
>WENV180022677
FTGN01001598
[FTGN] metagenome; soil
14
88
+
Gly
TCC
[ENA]
¢þ
>WENV180022653
FTGN01000520
[FTGN] metagenome; soil
20
97
+
Pro
GGG
[ENA]
¢þ
>WENV180022676
FTGN01001597
[FTGN] metagenome; soil
57
133
+
Arg
TCG
[ENA]
¢þ
>WENV180022650
FTGN01000333
[FTGN] metagenome; soil
59
132
+
Cys
GCA
[ENA]
¢þ
>WENV180022673
FTGN01001424
[FTGN] metagenome; soil
77
4
-
Gln
CTG
[ENA]
¢þ
>WENV180022648
FTGN01000062
[FTGN] metagenome; soil
106
189
+
Leu
TAG
[ENA]
¢þ
>WENV180022664
FTGN01001187
[FTGN] metagenome; soil
166
90
-
fMet
CAT
[ENA]
¢þ
>WENV180022666
FTGN01001233
[FTGN] metagenome; soil
314
240
-
Asn
GTT
[ENA]
¢þ
>WENV180022668
FTGN01001304
[FTGN] metagenome; soil
529
602
+
Thr
TGT
[ENA]
¢þ
>WENV180022657
FTGN01000854
[FTGN] metagenome; soil
557
629
+
Thr
GGT
[ENA]
¢þ
>WENV180022661
FTGN01001002
[FTGN] metagenome; soil
577
652
+
Phe
GAA
[ENA]
¢þ
>WENV180022651
FTGN01000408
[FTGN] metagenome; soil
781
854
+
Ile2
CAT
[ENA]
¢þ
>WENV180022659
FTGN01000895
[FTGN] metagenome; soil
807
881
+
Asn
GTT
[ENA]
¢þ
>WENV180022656
FTGN01000793
[FTGN] metagenome; soil
976
1052
+
Met
CAT
[ENA]
¢þ
>WENV180022660
FTGN01000895
[FTGN] metagenome; soil
987
1060
+
Ile2
CAT
[ENA]
¢þ
>WENV180022652
FTGN01000462
[FTGN] metagenome; soil
1289
1365
+
Arg
CCT
[ENA]
¢þ
>WENV180022669
FTGN01001313
[FTGN] metagenome; soil
1368
1292
-
Arg
ACG
[ENA]
¢þ
>WENV180022649
FTGN01000099
[FTGN] metagenome; soil
1425
1354
-
Gly
CCC
[ENA]
¢þ
>WENV180022655
FTGN01000781
[FTGN] metagenome; soil
1530
1604
+
Lys
TTT
[ENA]
¢þ
>WENV180022672
FTGN01001422
[FTGN] metagenome; soil
1606
1534
-
Ala
TGC
[ENA]
¢þ
>WENV180022674
FTGN01001430
[FTGN] metagenome; soil
1868
1792
-
Arg
ACG
[ENA]
¢þ
>WENV180022658
FTGN01000879
[FTGN] metagenome; soil
2562
2637
+
Phe
GAA
[ENA]
¢þ
>WENV180022665
FTGN01001217
[FTGN] metagenome; soil
2866
2791
-
Ala
CGC
[ENA]
¢þ
>WENV180022671
FTGN01001398
[FTGN] metagenome; soil
2899
2810
-
Ser
CGA
[ENA]
¢þ
>WENV180022670
FTGN01001391
[FTGN] metagenome; soil
3265
3341
+
Arg
TCT
[ENA]
¢þ
>WENV180022663
FTGN01001152
[FTGN] metagenome; soil
4154
4226
+
Lys
TTT
[ENA]
¢þ
>WENV180022667
FTGN01001249
[FTGN] metagenome; soil
4677
4753
+
Pro
CGG
[ENA]
¢þ
>WENV180022662
FTGN01001003
[FTGN] metagenome; soil
11893
11808
-
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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