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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTGP] metagenome; soil
HIT:
14 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022688
FTGP01000094
[FTGP] metagenome; soil
22
98
+
Met
CAT
[ENA]
¢þ
>WENV180022687
FTGP01000015
[FTGP] metagenome; soil
136
212
+
Met
CAT
[ENA]
¢þ
>WENV180022690
FTGP01000400
[FTGP] metagenome; soil
251
176
-
Asn
GTT
[ENA]
¢þ
>WENV180022695
FTGP01000607
[FTGP] metagenome; soil
310
235
-
Thr
CGT
[ENA]
¢þ
>WENV180022700
FTGP01000811
[FTGP] metagenome; soil
547
471
-
Pro
CGG
[ENA]
¢þ
>WENV180022689
FTGP01000358
[FTGP] metagenome; soil
560
486
-
Gly
GCC
[ENA]
¢þ
>WENV180022699
FTGP01000811
[FTGP] metagenome; soil
688
761
+
Gln
TTG
[ENA]
¢þ
>WENV180022691
FTGP01000477
[FTGP] metagenome; soil
1021
1095
+
Thr
GGT
[ENA]
¢þ
>WENV180022697
FTGP01000704
[FTGP] metagenome; soil
1231
1307
+
Pro
GGG
[ENA]
¢þ
>WENV180022692
FTGP01000540
[FTGP] metagenome; soil
1490
1579
+
Ser
CGA
[ENA]
¢þ
>WENV180022696
FTGP01000674
[FTGP] metagenome; soil
1966
1891
-
Lys
CTT
[ENA]
¢þ
>WENV180022698
FTGP01000723
[FTGP] metagenome; soil
2866
2777
-
Ser
GGA
[ENA]
¢þ
>WENV180022694
FTGP01000582
[FTGP] metagenome; soil
11872
11797
-
Ala
CGC
[ENA]
¢þ
>WENV180022693
FTGP01000582
[FTGP] metagenome; soil
13206
13282
+
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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