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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[FTGQ] metagenome; soil
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022708
FTGQ01000049
[FTGQ] metagenome; soil
73
1
-
His
GTG
[ENA]
¢þ
>WENV180022714
FTGQ01000064
[FTGQ] metagenome; soil
90
2
-
Ser
GGA
[ENA]
¢þ
>WENV180022741
FTGQ01000105
[FTGQ] metagenome; soil
266
340
+
Val
TAC
[ENA]
¢þ
>WENV180022707
FTGQ01000049
[FTGQ] metagenome; soil
327
240
-
Leu
GAG
[ENA]
¢þ
>WENV180022713
FTGQ01000056
[FTGQ] metagenome; soil
384
313
-
Gly
TCC
[ENA]
¢þ
>WENV180022743
FTGQ01000105
[FTGQ] metagenome; soil
453
381
-
Arg
TCT
[ENA]
¢þ
>WENV180022715
FTGQ01000069
[FTGQ] metagenome; soil
651
723
+
Arg
GCG
[ENA]
¢þ
>WENV180022717
FTGQ01000072
[FTGQ] metagenome; soil
1180
1265
+
Tyr
GTA
[ENA]
¢þ
>WENV180022701
FTGQ01000036
[FTGQ] metagenome; soil
1349
1430
+
Leu
TAG
[ENA]
¢þ
>WENV180022744
FTGQ01000106
[FTGQ] metagenome; soil
1563
1637
+
Ile
TAT
[ENA]
¢þ
>WENV180022740
FTGQ01000101
[FTGQ] metagenome; soil
2610
2686
+
Thr
TGT
[ENA]
¢þ
>WENV180022724
FTGQ01000077
[FTGQ] metagenome; soil
2835
2906
+
Trp
CCA
[ENA]
¢þ
>WENV180022731
FTGQ01000084
[FTGQ] metagenome; soil
2988
2917
-
Ala
GGC
[ENA]
¢þ
>WENV180022737
FTGQ01000087
[FTGQ] metagenome; soil
3502
3430
-
Glu
TTC
[ENA]
¢þ
>WENV180022732
FTGQ01000087
[FTGQ] metagenome; soil
3565
3652
+
Ser
CGA
[ENA]
¢þ
>WENV180022730
FTGQ01000084
[FTGQ] metagenome; soil
3681
3608
-
Arg
CCG
[ENA]
¢þ
>WENV180022742
FTGQ01000105
[FTGQ] metagenome; soil
4055
4140
+
Ser
TGA
[ENA]
¢þ
>WENV180022745
FTGQ01000111
[FTGQ] metagenome; soil
4532
4461
-
Gln
CTG
[ENA]
¢þ
>WENV180022729
FTGQ01000084
[FTGQ] metagenome; soil
4750
4677
-
Ala
CGC
[ENA]
¢þ
>WENV180022721
FTGQ01000075
[FTGQ] metagenome; soil
4868
4941
+
Thr
GGT
[ENA]
¢þ
>WENV180022722
FTGQ01000075
[FTGQ] metagenome; soil
4988
5062
+
Thr
CGT
[ENA]
¢þ
>WENV180022716
FTGQ01000069
[FTGQ] metagenome; soil
5736
5663
-
Lys
TTT
[ENA]
¢þ
>WENV180022733
FTGQ01000087
[FTGQ] metagenome; soil
6252
6325
+
Val
GAC
[ENA]
¢þ
>WENV180022710
FTGQ01000053
[FTGQ] metagenome; soil
6297
6225
-
His
GTG
[ENA]
¢þ
>WENV180022738
FTGQ01000093
[FTGQ] metagenome; soil
6374
6446
+
Asn
GTT
[ENA]
¢þ
>WENV180022711
FTGQ01000056
[FTGQ] metagenome; soil
6788
6859
+
Pro
TGG
[ENA]
¢þ
>WENV180022723
FTGQ01000076
[FTGQ] metagenome; soil
6818
6736
-
Leu
TAG
[ENA]
¢þ
>WENV180022728
FTGQ01000081
[FTGQ] metagenome; soil
6998
6916
-
Leu
CAG
[ENA]
¢þ
>WENV180022712
FTGQ01000056
[FTGQ] metagenome; soil
7760
7686
-
Arg
TCG
[ENA]
¢þ
>WENV180022718
FTGQ01000072
[FTGQ] metagenome; soil
8909
8983
+
Cys
GCA
[ENA]
¢þ
>WENV180022719
FTGQ01000072
[FTGQ] metagenome; soil
9006
9092
+
Leu
TAA
[ENA]
¢þ
>WENV180022727
FTGQ01000081
[FTGQ] metagenome; soil
9099
9026
-
Ile
GAT
[ENA]
¢þ
>WENV180022720
FTGQ01000072
[FTGQ] metagenome; soil
9744
9819
+
Lys
CTT
[ENA]
¢þ
>WENV180022726
FTGQ01000077
[FTGQ] metagenome; soil
10870
10789
-
Leu
CAA
[ENA]
¢þ
>WENV180022702
FTGQ01000047
[FTGQ] metagenome; soil
11386
11459
+
Ala
TGC
[ENA]
¢þ
>WENV180022734
FTGQ01000087
[FTGQ] metagenome; soil
15058
15131
+
Phe
GAA
[ENA]
¢þ
>WENV180022736
FTGQ01000087
[FTGQ] metagenome; soil
15559
15487
-
Arg
CCT
[ENA]
¢þ
>WENV180022735
FTGQ01000087
[FTGQ] metagenome; soil
15994
15922
-
Gly
CCC
[ENA]
¢þ
>WENV180022706
FTGQ01000047
[FTGQ] metagenome; soil
17862
17791
-
Pro
GGG
[ENA]
¢þ
>WENV180022705
FTGQ01000047
[FTGQ] metagenome; soil
18024
17951
-
Pro
CGG
[ENA]
¢þ
>WENV180022704
FTGQ01000047
[FTGQ] metagenome; soil
18134
18060
-
Val
CAC
[ENA]
¢þ
>WENV180022703
FTGQ01000047
[FTGQ] metagenome; soil
18205
18278
+
Ala
CGC
[ENA]
¢þ
>WENV180022709
FTGQ01000052
[FTGQ] metagenome; soil
21185
21094
-
Ser
GCT
[ENA]
¢þ
>WENV180022739
FTGQ01000100
[FTGQ] metagenome; soil
26487
26415
-
Glu
CTC
[ENA]
¢þ
>WENV180022725
FTGQ01000077
[FTGQ] metagenome; soil
32666
32737
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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