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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTGR] metagenome; soil
HIT:
11 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022751
FTGR01000395
[FTGR] metagenome; soil
408
335
-
Gly
TCC
[ENA]
¢þ
>WENV180022746
FTGR01000322
[FTGR] metagenome; soil
414
499
+
Tyr
GTA
[ENA]
¢þ
>WENV180022747
FTGR01000322
[FTGR] metagenome; soil
563
636
+
Gly
TCC
[ENA]
¢þ
>WENV180022748
FTGR01000322
[FTGR] metagenome; soil
682
756
+
Thr
GGT
[ENA]
¢þ
>WENV180022755
FTGR01000478
[FTGR] metagenome; soil
736
663
-
Gly
TCC
[ENA]
¢þ
>WENV180022749
FTGR01000323
[FTGR] metagenome; soil
827
903
+
Glu
TTC
[ENA]
¢þ
>WENV180022754
FTGR01000478
[FTGR] metagenome; soil
897
812
-
Tyr
GTA
[ENA]
¢þ
>WENV180022750
FTGR01000344
[FTGR] metagenome; soil
1853
1778
-
Lys
TTT
[ENA]
¢þ
>WENV180022752
FTGR01000436
[FTGR] metagenome; soil
2775
2850
+
Thr
CGT
[ENA]
¢þ
>WENV180022753
FTGR01000468
[FTGR] metagenome; soil
6216
6291
+
Ala
CGC
[ENA]
¢þ
>WENV180022756
FTGR01000615
[FTGR] metagenome; soil
7261
7336
+
Arg
CCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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