This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTGS] metagenome; soil
HIT:
53 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022807
FTGS01002561
[FTGS] metagenome; soil
5
76
+
Gln
CTG
[ENA]
¢þ
>WENV180022800
FTGS01002306
[FTGS] metagenome; soil
10
103
+
Ser
GCT
[ENA]
¢þ
>WENV180022799
FTGS01002264
[FTGS] metagenome; soil
24
99
+
Thr
CGT
[ENA]
¢þ
>WENV180022801
FTGS01002383
[FTGS] metagenome; soil
70
-1
-
Gly
TCC
[ENA]
¢þ
>WENV180022788
FTGS01001530
[FTGS] metagenome; soil
73
-1
-
Pro
CGG
[ENA]
¢þ
>WENV180022785
FTGS01001312
[FTGS] metagenome; soil
77
4
-
Ile2
CAT
[ENA]
¢þ
>WENV180022781
FTGS01001131
[FTGS] metagenome; soil
86
11
-
Arg
ACG
[ENA]
¢þ
>WENV180022794
FTGS01001986
[FTGS] metagenome; soil
89
16
-
fMet
CAT
[ENA]
¢þ
>WENV180022808
FTGS01002568
[FTGS] metagenome; soil
130
44
-
Leu
CAG
[ENA]
¢þ
>WENV180022780
FTGS01001131
[FTGS] metagenome; soil
165
90
-
Glu
TTC
[ENA]
¢þ
>WENV180022784
FTGS01001312
[FTGS] metagenome; soil
174
101
-
Asn
GTT
[ENA]
¢þ
>WENV180022779
FTGS01001131
[FTGS] metagenome; soil
254
179
-
Lys
TTT
[ENA]
¢þ
>WENV180022762
FTGS01000475
[FTGS] metagenome; soil
269
360
+
Ser
GGA
[ENA]
¢þ
>WENV180022795
FTGS01002113
[FTGS] metagenome; soil
314
389
+
Ala
TGC
[ENA]
¢þ
>WENV180022757
FTGS01000250
[FTGS] metagenome; soil
338
414
+
Pro
GGG
[ENA]
¢þ
>WENV180022789
FTGS01001603
[FTGS] metagenome; soil
411
339
-
Arg
CCG
[ENA]
¢þ
>WENV180022766
FTGS01000862
[FTGS] metagenome; soil
422
346
-
Pro
CGG
[ENA]
¢þ
>WENV180022763
FTGS01000501
[FTGS] metagenome; soil
478
551
+
Asn
GTT
[ENA]
¢þ
>WENV180022804
FTGS01002465
[FTGS] metagenome; soil
521
445
-
Pro
CGG
[ENA]
¢þ
>WENV180022765
FTGS01000862
[FTGS] metagenome; soil
577
650
+
Gln
TTG
[ENA]
¢þ
>WENV180022770
FTGS01001115
[FTGS] metagenome; soil
599
524
-
Trp
CCA
[ENA]
¢þ
>WENV180022806
FTGS01002480
[FTGS] metagenome; soil
672
598
-
Asp
GTC
[ENA]
¢þ
>WENV180022793
FTGS01001980
[FTGS] metagenome; soil
673
745
+
Trp
CCA
[ENA]
¢þ
>WENV180022778
FTGS01001131
[FTGS] metagenome; soil
698
622
-
Lys
CTT
[ENA]
¢þ
>WENV180022803
FTGS01002465
[FTGS] metagenome; soil
698
771
+
Gln
TTG
[ENA]
¢þ
>WENV180022764
FTGS01000529
[FTGS] metagenome; soil
714
641
-
Val
TAC
[ENA]
¢þ
>WENV180022783
FTGS01001269
[FTGS] metagenome; soil
716
632
-
Tyr
GTA
[ENA]
¢þ
>WENV180022802
FTGS01002464
[FTGS] metagenome; soil
724
796
+
Cys
GCA
[ENA]
¢þ
>WENV180022790
FTGS01001769
[FTGS] metagenome; soil
727
801
+
Gly
GCC
[ENA]
¢þ
>WENV180022760
FTGS01000377
[FTGS] metagenome; soil
750
824
+
Gln
CTG
[ENA]
¢þ
>WENV180022777
FTGS01001131
[FTGS] metagenome; soil
774
699
-
Met
CAT
[ENA]
¢þ
>WENV180022796
FTGS01002156
[FTGS] metagenome; soil
788
716
-
Trp
CCA
[ENA]
¢þ
>WENV180022805
FTGS01002480
[FTGS] metagenome; soil
824
751
-
Val
TAC
[ENA]
¢þ
>WENV180022776
FTGS01001131
[FTGS] metagenome; soil
852
777
-
Gln
TTG
[ENA]
¢þ
>WENV180022761
FTGS01000377
[FTGS] metagenome; soil
874
946
+
Glu
CTC
[ENA]
¢þ
>WENV180022782
FTGS01001268
[FTGS] metagenome; soil
891
965
+
Val
CAC
[ENA]
¢þ
>WENV180022791
FTGS01001769
[FTGS] metagenome; soil
923
996
+
Cys
GCA
[ENA]
¢þ
>WENV180022775
FTGS01001131
[FTGS] metagenome; soil
935
861
-
Arg
TCT
[ENA]
¢þ
>WENV180022768
FTGS01001013
[FTGS] metagenome; soil
955
881
-
Ile2
CAT
[ENA]
¢þ
>WENV180022797
FTGS01002202
[FTGS] metagenome; soil
1142
1230
+
Tyr
GTA
[ENA]
¢þ
>WENV180022786
FTGS01001403
[FTGS] metagenome; soil
1170
1099
-
Gln
CTG
[ENA]
¢þ
>WENV180022774
FTGS01001131
[FTGS] metagenome; soil
1190
1114
-
Asn
GTT
[ENA]
¢þ
>WENV180022798
FTGS01002202
[FTGS] metagenome; soil
1247
1322
+
Thr
GGT
[ENA]
¢þ
>WENV180022773
FTGS01001131
[FTGS] metagenome; soil
1273
1198
-
Pro
CGG
[ENA]
¢þ
>WENV180022792
FTGS01001776
[FTGS] metagenome; soil
1313
1386
+
Gln
TTG
[ENA]
¢þ
>WENV180022772
FTGS01001131
[FTGS] metagenome; soil
1367
1292
-
Arg
CCG
[ENA]
¢þ
>WENV180022769
FTGS01001053
[FTGS] metagenome; soil
1474
1550
+
Pro
TGG
[ENA]
¢þ
>WENV180022787
FTGS01001408
[FTGS] metagenome; soil
1547
1471
-
Val
CAC
[ENA]
¢þ
>WENV180022771
FTGS01001131
[FTGS] metagenome; soil
1554
1481
-
Ala
TGC
[ENA]
¢þ
>WENV180022767
FTGS01000940
[FTGS] metagenome; soil
1989
1906
-
Leu
CAA
[ENA]
¢þ
>WENV180022759
FTGS01000297
[FTGS] metagenome; soil
2301
2226
-
Ala
TGC
[ENA]
¢þ
>WENV180022758
FTGS01000297
[FTGS] metagenome; soil
2408
2332
-
Ile
GAT
[ENA]
¢þ
>WENV180022809
FTGS01002632
[FTGS] metagenome; soil
4389
4462
+
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK