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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTGT] metagenome; soil
HIT:
11 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022814
FTGT01000228
[FTGT] metagenome; soil
146
71
-
Ala
CGC
[ENA]
¢þ
>WENV180022812
FTGT01000194
[FTGT] metagenome; soil
498
573
+
Ala
CGC
[ENA]
¢þ
>WENV180022816
FTGT01000316
[FTGT] metagenome; soil
543
628
+
Leu
CAA
[ENA]
¢þ
>WENV180022811
FTGT01000017
[FTGT] metagenome; soil
551
627
+
Arg
CCT
[ENA]
¢þ
>WENV180022819
FTGT01000343
[FTGT] metagenome; soil
1172
1096
-
Arg
TCT
[ENA]
¢þ
>WENV180022810
FTGT01000013
[FTGT] metagenome; soil
1348
1274
-
Asn
GTT
[ENA]
¢þ
>WENV180022813
FTGT01000205
[FTGT] metagenome; soil
1622
1549
-
Gln
CTG
[ENA]
¢þ
>WENV180022818
FTGT01000343
[FTGT] metagenome; soil
1698
1622
-
Pro
TGG
[ENA]
¢þ
>WENV180022817
FTGT01000338
[FTGT] metagenome; soil
2001
1926
-
Lys
CTT
[ENA]
¢þ
>WENV180022820
FTGT01000372
[FTGT] metagenome; soil
2428
2503
+
Thr
CGT
[ENA]
¢þ
>WENV180022815
FTGT01000249
[FTGT] metagenome; soil
2627
2701
+
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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