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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FTGU] metagenome; soil
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022826
FTGU01000377
[FTGU] metagenome; soil
56
141
+
Leu
CAA
[ENA]
¢þ
>WENV180022828
FTGU01000394
[FTGU] metagenome; soil
150
74
-
Pro
CGG
[ENA]
¢þ
>WENV180022836
FTGU01000720
[FTGU] metagenome; soil
192
107
-
Tyr
GTA
[ENA]
¢þ
>WENV180022827
FTGU01000394
[FTGU] metagenome; soil
293
366
+
Gln
TTG
[ENA]
¢þ
>WENV180022830
FTGU01000429
[FTGU] metagenome; soil
646
551
-
SeC
TCA
[ENA]
¢þ
>WENV180022824
FTGU01000328
[FTGU] metagenome; soil
877
963
+
Leu
TAA
[ENA]
¢þ
>WENV180022838
FTGU01000732
[FTGU] metagenome; soil
897
973
+
Val
TAC
[ENA]
¢þ
>WENV180022823
FTGU01000313
[FTGU] metagenome; soil
1380
1455
+
Ala
CGC
[ENA]
¢þ
>WENV180022829
FTGU01000403
[FTGU] metagenome; soil
1525
1436
-
Ser
CGA
[ENA]
¢þ
>WENV180022834
FTGU01000523
[FTGU] metagenome; soil
1877
1802
-
Ile2
CAT
[ENA]
¢þ
>WENV180022825
FTGU01000346
[FTGU] metagenome; soil
2251
2340
+
Ser
TGA
[ENA]
¢þ
>WENV180022837
FTGU01000728
[FTGU] metagenome; soil
2688
2762
+
Lys
TTT
[ENA]
¢þ
>WENV180022821
FTGU01000176
[FTGU] metagenome; soil
2773
2849
+
Arg
CCT
[ENA]
¢þ
>WENV180022839
FTGU01000732
[FTGU] metagenome; soil
3154
3078
-
Asp
GTC
[ENA]
¢þ
>WENV180022833
FTGU01000510
[FTGU] metagenome; soil
3612
3687
+
Thr
CGT
[ENA]
¢þ
>WENV180022822
FTGU01000189
[FTGU] metagenome; soil
4406
4332
-
Gly
GCC
[ENA]
¢þ
>WENV180022832
FTGU01000480
[FTGU] metagenome; soil
5146
5070
-
Arg
TCT
[ENA]
¢þ
>WENV180022831
FTGU01000480
[FTGU] metagenome; soil
6265
6189
-
Pro
TGG
[ENA]
¢þ
>WENV180022835
FTGU01000645
[FTGU] metagenome; soil
6953
6879
-
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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