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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTGV] metagenome; soil
HIT:
18 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022855
FTGV01001420
[FTGV] metagenome; soil
8
82
+
Asn
GTT
[ENA]
¢þ
>WENV180022854
FTGV01001231
[FTGV] metagenome; soil
21
96
+
Ala
GGC
[ENA]
¢þ
>WENV180022857
FTGV01001608
[FTGV] metagenome; soil
23
99
+
Pro
CGG
[ENA]
¢þ
>WENV180022848
FTGV01000750
[FTGV] metagenome; soil
28
100
+
Lys
TTT
[ENA]
¢þ
>WENV180022849
FTGV01000770
[FTGV] metagenome; soil
70
146
+
Arg
TCT
[ENA]
¢þ
>WENV180022840
FTGV01000096
[FTGV] metagenome; soil
184
260
+
Arg
ACG
[ENA]
¢þ
>WENV180022844
FTGV01000424
[FTGV] metagenome; soil
463
389
-
Glu
TTC
[ENA]
¢þ
>WENV180022847
FTGV01000690
[FTGV] metagenome; soil
464
378
-
Leu
GAG
[ENA]
¢þ
>WENV180022846
FTGV01000605
[FTGV] metagenome; soil
510
434
-
Pro
GGG
[ENA]
¢þ
>WENV180022851
FTGV01000816
[FTGV] metagenome; soil
579
664
+
Leu
CAG
[ENA]
¢þ
>WENV180022850
FTGV01000805
[FTGV] metagenome; soil
971
1046
+
Ala
GGC
[ENA]
¢þ
>WENV180022841
FTGV01000118
[FTGV] metagenome; soil
1200
1114
-
Leu
CAG
[ENA]
¢þ
>WENV180022845
FTGV01000503
[FTGV] metagenome; soil
1324
1250
-
Glu
TTC
[ENA]
¢þ
>WENV180022853
FTGV01001125
[FTGV] metagenome; soil
1494
1418
-
Pro
GGG
[ENA]
¢þ
>WENV180022842
FTGV01000259
[FTGV] metagenome; soil
1694
1619
-
Trp
CCA
[ENA]
¢þ
>WENV180022843
FTGV01000379
[FTGV] metagenome; soil
2571
2496
-
Phe
GAA
[ENA]
¢þ
>WENV180022852
FTGV01001003
[FTGV] metagenome; soil
3407
3332
-
Glu
TTC
[ENA]
¢þ
>WENV180022856
FTGV01001584
[FTGV] metagenome; soil
6489
6414
-
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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