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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTHA] metagenome; soil
HIT:
94 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180022872
FTHA01000026
[FTHA] metagenome; soil
6
95
+
Ser
GGA
[ENA]
¢þ
>WENV180022940
FTHA01001710
[FTHA] metagenome; soil
8
81
+
Gln
TTG
[ENA]
¢þ
>WENV180022881
FTHA01000456
[FTHA] metagenome; soil
14
97
+
Leu
CAA
[ENA]
¢þ
>WENV180022928
FTHA01001333
[FTHA] metagenome; soil
15
91
+
Arg
CCT
[ENA]
¢þ
>WENV180022944
FTHA01001773
[FTHA] metagenome; soil
22
95
+
Cys
GCA
[ENA]
¢þ
>WENV180022878
FTHA01000338
[FTHA] metagenome; soil
24
97
+
Asp
GTC
[ENA]
¢þ
>WENV180022890
FTHA01000623
[FTHA] metagenome; soil
24
99
+
Asn
GTT
[ENA]
¢þ
>WENV180022919
FTHA01001090
[FTHA] metagenome; soil
25
99
+
Gly
GCC
[ENA]
¢þ
>WENV180022900
FTHA01000720
[FTHA] metagenome; soil
73
-1
-
Pro
CGG
[ENA]
¢þ
>WENV180022930
FTHA01001372
[FTHA] metagenome; soil
76
2
-
Val
CAC
[ENA]
¢þ
>WENV180022886
FTHA01000572
[FTHA] metagenome; soil
91
2
-
Ser
CGA
[ENA]
¢þ
>WENV180022905
FTHA01000760
[FTHA] metagenome; soil
202
278
+
fMet
CAT
[ENA]
¢þ
>WENV180022899
FTHA01000720
[FTHA] metagenome; soil
228
301
+
Gln
TTG
[ENA]
¢þ
>WENV180022884
FTHA01000535
[FTHA] metagenome; soil
327
402
+
Asn
GTT
[ENA]
¢þ
>WENV180022875
FTHA01000152
[FTHA] metagenome; soil
455
371
-
Leu
GAG
[ENA]
¢þ
>WENV180022876
FTHA01000196
[FTHA] metagenome; soil
465
390
-
Ala
CGC
[ENA]
¢þ
>WENV180022941
FTHA01001721
[FTHA] metagenome; soil
541
467
-
Lys
TTT
[ENA]
¢þ
>WENV180022904
FTHA01000759
[FTHA] metagenome; soil
679
765
+
Leu
TAA
[ENA]
¢þ
>WENV180022929
FTHA01001349
[FTHA] metagenome; soil
712
638
-
Gly
GCC
[ENA]
¢þ
>WENV180022964
FTHA01002091
[FTHA] metagenome; soil
865
941
+
Asp
GTC
[ENA]
¢þ
>WENV180022882
FTHA01000464
[FTHA] metagenome; soil
920
995
+
Phe
GAA
[ENA]
¢þ
>WENV180022885
FTHA01000545
[FTHA] metagenome; soil
930
1005
+
Ala
GGC
[ENA]
¢þ
>WENV180022926
FTHA01001232
[FTHA] metagenome; soil
1092
1168
+
His
GTG
[ENA]
¢þ
>WENV180022916
FTHA01001032
[FTHA] metagenome; soil
1110
1199
+
Ser
TGA
[ENA]
¢þ
>WENV180022873
FTHA01000039
[FTHA] metagenome; soil
1134
1059
-
Trp
CCA
[ENA]
¢þ
>WENV180022874
FTHA01000113
[FTHA] metagenome; soil
1247
1333
+
Ser
GGA
[ENA]
¢þ
>WENV180022877
FTHA01000227
[FTHA] metagenome; soil
1308
1381
+
Thr
TGT
[ENA]
¢þ
>WENV180022943
FTHA01001760
[FTHA] metagenome; soil
1348
1273
-
Trp
CCA
[ENA]
¢þ
>WENV180022879
FTHA01000389
[FTHA] metagenome; soil
1571
1654
+
Leu
CAA
[ENA]
¢þ
>WENV180022953
FTHA01001917
[FTHA] metagenome; soil
1650
1576
-
Gly
CCC
[ENA]
¢þ
>WENV180022961
FTHA01002025
[FTHA] metagenome; soil
1808
1892
+
Leu
TAG
[ENA]
¢þ
>WENV180022946
FTHA01001822
[FTHA] metagenome; soil
1897
1972
+
Phe
GAA
[ENA]
¢þ
>WENV180022936
FTHA01001623
[FTHA] metagenome; soil
2085
2010
-
Val
TAC
[ENA]
¢þ
>WENV180022913
FTHA01001004
[FTHA] metagenome; soil
2093
2169
+
Pro
TGG
[ENA]
¢þ
>WENV180022960
FTHA01001998
[FTHA] metagenome; soil
2168
2093
-
Phe
GAA
[ENA]
¢þ
>WENV180022947
FTHA01001831
[FTHA] metagenome; soil
2305
2381
+
Val
TAC
[ENA]
¢þ
>WENV180022917
FTHA01001036
[FTHA] metagenome; soil
2413
2499
+
Leu
CAG
[ENA]
¢þ
>WENV180022914
FTHA01001004
[FTHA] metagenome; soil
2524
2600
+
Arg
TCT
[ENA]
¢þ
>WENV180022945
FTHA01001788
[FTHA] metagenome; soil
2619
2545
-
Thr
GGT
[ENA]
¢þ
>WENV180022918
FTHA01001039
[FTHA] metagenome; soil
2781
2870
+
Ser
TGA
[ENA]
¢þ
>WENV180022927
FTHA01001273
[FTHA] metagenome; soil
2923
2847
-
Asp
GTC
[ENA]
¢þ
>WENV180022896
FTHA01000684
[FTHA] metagenome; soil
2938
3033
+
SeC
TCA
[ENA]
¢þ
>WENV180022907
FTHA01000771
[FTHA] metagenome; soil
3486
3410
-
Pro
GGG
[ENA]
¢þ
>WENV180022957
FTHA01001989
[FTHA] metagenome; soil
3495
3570
+
Phe
GAA
[ENA]
¢þ
>WENV180022965
FTHA01002091
[FTHA] metagenome; soil
3630
3706
+
Val
TAC
[ENA]
¢þ
>WENV180022903
FTHA01000755
[FTHA] metagenome; soil
3699
3623
-
Met
CAT
[ENA]
¢þ
>WENV180022933
FTHA01001536
[FTHA] metagenome; soil
3782
3857
+
Thr
CGT
[ENA]
¢þ
>WENV180022948
FTHA01001835
[FTHA] metagenome; soil
4073
3997
-
Pro
GGG
[ENA]
¢þ
>WENV180022902
FTHA01000755
[FTHA] metagenome; soil
4512
4587
+
Ala
CGC
[ENA]
¢þ
>WENV180022906
FTHA01000770
[FTHA] metagenome; soil
4873
4797
-
His
GTG
[ENA]
¢þ
>WENV180022958
FTHA01001992
[FTHA] metagenome; soil
4933
5017
+
Leu
GAG
[ENA]
¢þ
>WENV180022935
FTHA01001601
[FTHA] metagenome; soil
4954
4878
-
Pro
CGG
[ENA]
¢þ
>WENV180022880
FTHA01000409
[FTHA] metagenome; soil
5249
5174
-
Ala
GGC
[ENA]
¢þ
>WENV180022924
FTHA01001158
[FTHA] metagenome; soil
5307
5233
-
Val
CAC
[ENA]
¢þ
>WENV180022934
FTHA01001601
[FTHA] metagenome; soil
5540
5613
+
Gln
TTG
[ENA]
¢þ
>WENV180022956
FTHA01001933
[FTHA] metagenome; soil
5746
5821
+
Phe
GAA
[ENA]
¢þ
>WENV180022892
FTHA01000638
[FTHA] metagenome; soil
6296
6370
+
Gly
CCC
[ENA]
¢þ
>WENV180022901
FTHA01000733
[FTHA] metagenome; soil
6529
6603
+
Val
GAC
[ENA]
¢þ
>WENV180022952
FTHA01001902
[FTHA] metagenome; soil
6696
6622
-
Lys
TTT
[ENA]
¢þ
>WENV180022891
FTHA01000632
[FTHA] metagenome; soil
7083
7172
+
Ser
CGA
[ENA]
¢þ
>WENV180022925
FTHA01001183
[FTHA] metagenome; soil
8025
8109
+
Leu
TAG
[ENA]
¢þ
>WENV180022920
FTHA01001096
[FTHA] metagenome; soil
8542
8618
+
Ile2
CAT
[ENA]
¢þ
>WENV180022959
FTHA01001998
[FTHA] metagenome; soil
8721
8795
+
Thr
GGT
[ENA]
¢þ
>WENV180022883
FTHA01000533
[FTHA] metagenome; soil
9625
9700
+
Thr
TGT
[ENA]
¢þ
>WENV180022922
FTHA01001139
[FTHA] metagenome; soil
9811
9887
+
Pro
GGG
[ENA]
¢þ
>WENV180022912
FTHA01000928
[FTHA] metagenome; soil
10154
10229
+
Ile2
CAT
[ENA]
¢þ
>WENV180022893
FTHA01000659
[FTHA] metagenome; soil
10228
10144
-
Leu
TAG
[ENA]
¢þ
>WENV180022955
FTHA01001929
[FTHA] metagenome; soil
11965
11892
-
Cys
GCA
[ENA]
¢þ
>WENV180022889
FTHA01000618
[FTHA] metagenome; soil
12910
12818
-
Ser
GCT
[ENA]
¢þ
>WENV180022932
FTHA01001430
[FTHA] metagenome; soil
13415
13489
+
Val
GAC
[ENA]
¢þ
>WENV180022909
FTHA01000839
[FTHA] metagenome; soil
13744
13670
-
Glu
TTC
[ENA]
¢þ
>WENV180022908
FTHA01000819
[FTHA] metagenome; soil
14797
14721
-
Pro
CGG
[ENA]
¢þ
>WENV180022894
FTHA01000669
[FTHA] metagenome; soil
15009
14933
-
Arg
CCT
[ENA]
¢þ
>WENV180022898
FTHA01000691
[FTHA] metagenome; soil
15323
15247
-
Arg
CCG
[ENA]
¢þ
>WENV180022915
FTHA01001008
[FTHA] metagenome; soil
15482
15558
+
Arg
CCT
[ENA]
¢þ
>WENV180022931
FTHA01001402
[FTHA] metagenome; soil
15559
15485
-
Val
CAC
[ENA]
¢þ
>WENV180022921
FTHA01001110
[FTHA] metagenome; soil
15685
15611
-
Lys
TTT
[ENA]
¢þ
>WENV180022895
FTHA01000674
[FTHA] metagenome; soil
20613
20528
-
Leu
CAG
[ENA]
¢þ
>WENV180022942
FTHA01001744
[FTHA] metagenome; soil
21363
21279
-
Leu
GAG
[ENA]
¢þ
>WENV180022951
FTHA01001902
[FTHA] metagenome; soil
21977
21901
-
Arg
TCT
[ENA]
¢þ
>WENV180022950
FTHA01001902
[FTHA] metagenome; soil
22397
22321
-
Pro
TGG
[ENA]
¢þ
>WENV180022897
FTHA01000689
[FTHA] metagenome; soil
23090
23163
+
Cys
GCA
[ENA]
¢þ
>WENV180022954
FTHA01001925
[FTHA] metagenome; soil
24274
24198
-
Arg
CCG
[ENA]
¢þ
>WENV180022888
FTHA01000592
[FTHA] metagenome; soil
25296
25221
-
Ala
CGC
[ENA]
¢þ
>WENV180022949
FTHA01001902
[FTHA] metagenome; soil
25805
25731
-
Glu
TTC
[ENA]
¢þ
>WENV180022963
FTHA01002033
[FTHA] metagenome; soil
26527
26452
-
Thr
TGT
[ENA]
¢þ
>WENV180022937
FTHA01001641
[FTHA] metagenome; soil
29471
29545
+
Gly
GCC
[ENA]
¢þ
>WENV180022887
FTHA01000592
[FTHA] metagenome; soil
30375
30451
+
Met
CAT
[ENA]
¢þ
>WENV180022962
FTHA01002033
[FTHA] metagenome; soil
32466
32551
+
Tyr
GTA
[ENA]
¢þ
>WENV180022939
FTHA01001696
[FTHA] metagenome; soil
41062
41151
+
Ser
GGA
[ENA]
¢þ
>WENV180022923
FTHA01001139
[FTHA] metagenome; soil
54332
54423
+
Ser
GCT
[ENA]
¢þ
>WENV180022938
FTHA01001687
[FTHA] metagenome; soil
62052
62128
+
Arg
ACG
[ENA]
¢þ
>WENV180022911
FTHA01000906
[FTHA] metagenome; soil
63875
63800
-
Lys
CTT
[ENA]
¢þ
>WENV180022910
FTHA01000906
[FTHA] metagenome; soil
75163
75239
+
His
GTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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